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pangenomeMetagenomicsNormalizer

  • takes a presence absence file of metagenomics and then sum the presence absence across the species and then divide it with the number of the gene ontology plus child categories included and presents you a ratio.
  • The higher the ratio means that the ontology is distributed well across all the species.
pangenomeMetagenomicsNormalize("/Users/gauravsablok/Desktop/CodeCheck/csv_test_datasets/Pangenome.csv")
	go_category	effectsize
0	atp-dependent clp atp-binding subunit	34.50
1	dna a subunit	13.29
2	dna gyrase subunit b	11.50
3	phospho-2-dehydro-3-deoxyheptonate aldolase	17.40
4	6-phospho-beta-glucosidase	27.33
...	...	...
1656	nucleotidyltransferase domain	1.00
1657	sodium-dependent phosphate transporter	0.10
1658	adenine-specific dna-methyltransferase ed	0.25

Gaurav Sablok
University of Potsdam
Potsdam,Germany