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aryeelab

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  1. guideseq guideseq Public

    Analysis pipeline for the GUIDE-seq assay.

    Python 77 55

  2. hichipper hichipper Public

    A preprocessing and QC pipeline for HiChIP data

    HTML 33 12

  3. umi umi Public

    Preprocessing tools for unique molecular index (UMI) sequencing reads

    Python 31 27

  4. bisulfite-seq-tools bisulfite-seq-tools Public

    Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequenc…

    HTML 18 2

  5. colon-dna-topology colon-dna-topology Public

    Shell 5 2

  6. DNAlandscapeR DNAlandscapeR Public

    Shiny app that integrates ChIA-PET and other epigenetic tracks

    C++ 3 2

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