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_config.yml
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_config.yml
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# -----------------------------------------------------------------------------
# Site settings
# -----------------------------------------------------------------------------
title: Aryee Lab
email: martin.aryee@ds.dfci.harvard.edu
description: > # this means to ignore newlines until "url:"
A simple, whitespace theme for academics. Based on [*folio](https://github.com/bogoli/-folio) design.
footer_text: >
Powered by <a href="http://jekyllrb.com/" target="_blank">Jekyll</a> with <a href="https://github.com/alshedivat/al-folio">al-folio</a> theme.
url:
baseurl:
last_updated: false # set to true if you want to display last updated in the footer
# -----------------------------------------------------------------------------
# Layout
# -----------------------------------------------------------------------------
navbar_fixed: true
footer_fixed: true
# TODO: add layout settings (single page vs. multi-page)
# -----------------------------------------------------------------------------
# Open Graph
# -----------------------------------------------------------------------------
# Display links to the page with a preview object on social media.
# To achieve this, change serve_og_meta to true and then provide the URL of the
# preview image as the value of og_image.
serve_og_meta: false # Include Open Graph meta tags in the HTML head
og_image: # The site-wide (default for all links) Open Graph preview image
# -----------------------------------------------------------------------------
# Social integration
# -----------------------------------------------------------------------------
github_username: # aryeelab
twitter_username: # @MartinAryee
linkedin_username: # your LinkedIn user name
scholar_userid: # your Google Scholar ID
orcid_id: #0000-0002-6848-1344
medium_username: # your Medium username
quora_username: # your Quora username
publons_id: # your ID on Publons
research_gate_profile: # your profile on ResearchGate
blogger_url: # your blogger URL
contact_note: >
Get in touch with the email link above.
google_analytics: UA-XXXXXXXXX # out your google-analytics code
# -----------------------------------------------------------------------------
# Blog
# -----------------------------------------------------------------------------
blog_name:
blog_description: a simple whitespace theme for academics
permalink: /blog/:year/:title/
# Pagination
pagination:
enabled: true
# Comments
disqus_shortname: al-folio # put your disqus shortname
# -----------------------------------------------------------------------------
# Collections
# -----------------------------------------------------------------------------
collections:
news:
defaults:
layout: post
output: true
permalink: /news/:path/
projects:
output: true
permalink: /projects/:path/
news_limit: 5
# -----------------------------------------------------------------------------
# Jekyll settings
# -----------------------------------------------------------------------------
# Markdown and syntax highlight
markdown: kramdown
highlighter: rouge
highlight_theme: github # https://github.com/jwarby/jekyll-pygments-themes
kramdown:
input: GFM
syntax_highlighter_opts:
css_class: 'highlight'
span:
line_numbers: false
block:
line_numbers: false
start_line: 1
# Includes & excludes
include: ['_pages']
exclude: [vendor]
# Plug-ins
plugins:
- jekyll-email-protect
- jekyll-paginate-v2
- jekyll/scholar
- jemoji
# - bootstrap
# - material-sass
# -----------------------------------------------------------------------------
# Jekyll Scholar
# -----------------------------------------------------------------------------
scholar:
last_name: Aryee
style: apa
locale: en
sort_by: year
order: descending
source: /_bibliography/
bibliography: papers.bib
bibliography_template: bib
replace_strings: true
join_strings: true
details_dir: bibliography
details_layout: bibtex.html
details_link: Details
query: "@*"
# -----------------------------------------------------------------------------
# Optional Features
# -----------------------------------------------------------------------------
enable_google_analytics: false
enable_katex: true
enable_mansory: true
enable_progressbar: true
enable_tooltips: false
show_social_icons: false
# -----------------------------------------------------------------------------
# Library versions
# -----------------------------------------------------------------------------
academicons:
version: "1.8.6"
integrity: "sha256-uFVgMKfistnJAfoCUQigIl+JfUaP47GrRKjf6CTPVmw="
bootstrap:
version: "4.4.1"
integrity:
css: "sha384-Vkoo8x4CGsO3+Hhxv8T/Q5PaXtkKtu6ug5TOeNV6gBiFeWPGFN9MuhOf23Q9Ifjh"
js: "sha384-wfSDF2E50Y2D1uUdj0O3uMBJnjuUD4Ih7YwaYd1iqfktj0Uod8GCExl3Og8ifwB6"
fontawesome:
version: "5.13.0"
integrity: "sha256-h20CPZ0QyXlBuAw7A+KluUYx/3pK+c7lYEpqLTlxjYQ="
jquery:
version: "3.4.1"
integrity: "sha384-J6qa4849blE2+poT4WnyKhv5vZF5SrPo0iEjwBvKU7imGFAV0wwj1yYfoRSJoZ+n"
katex:
version: "0.11.1"
integrity:
css: "sha256-V8SV2MO1FUb63Bwht5Wx9x6PVHNa02gv8BgH/uH3ung="
js: "sha256-F/Xda58SPdcUCr+xhSGz9MA2zQBPb0ASEYKohl8UCHc="
mansory:
version: "4.2.2"
integrity: "sha256-Nn1q/fx0H7SNLZMQ5Hw5JLaTRZp0yILA/FRexe19VdI="
mdb:
version: "4.17.0"
integrity:
css: "sha256-/SwJ2GDcEt5382i8zqDwl36VJGECxEoIcBIuoLmLR4g="
js: "sha256-UGNYR+uy841zU5TiO2yXD96UktHt9TM4/WXvsDLr4l0="
popper:
version: "2.4.0"
integrity: "sha256-OH05DFHUWzr725HmuHo3pnuvUUn+TJuj8/Qz9xytFEw="