v3.13.0

What's Changed

• Feature/devsu 2216 include recruitment status in kbmatches by @elewis2 in #144
• Release v3.13.0 by @elewis2 in #145

Full Changelog: v3.12.2...v3.13.0

Release v3.12.2 bugfix

Release v3.12.2

• SDEV-4041 - bugfix - key error on setting gene properties. Remove gene properties not in the IPR spec.
• SDEV-4041 - update tests test_found_kb_statement_related_gene and test_found_kb_statement_related_gene.

What's Changed

• add workflow to create pr back to dev by @elewis2 in #138
• merge back to dev by @elewis2 in #139
• merge back to dev by @elewis2 in #141
• Bugfix/sdev 4041 gsc report fail pog1650 by @dustinbleile in #142

Full Changelog: v3.12.1...v3.12.2

Release v3.12.1 bugfix

What's Changed

• Release v3.12.1 - Bugfix/spec url by @elewis2 in #140

Full Changelog: v3.12.0...v3.12.1

Release v3.12.0

Release v3.12.0

Improvement:

• DEVSU-2144: updates IprGene property name cancerRelated -> kbStatementRelated and adds IprGene property cancerGeneListMatch
• handles possibly out-of-sync column names in IPR-API and pori_graphkb_python

New Feature:

• adds ability to check the current IPR-API spec to determine whether or not IprGene definitions can be loaded as-is

Bugfix:

• SDEV-4041 - display_variant crash for fusions without hgvs representations. Default to 'variant' display string.

What's Changed

• SDEV-4029 - setup.cfg - remove biopython version restriction by @dustinbleile in #130
• merge master back to dev by @elewis2 in #132
• Bugfix/sdev 4041 fusion crash by @dustinbleile in #134
• Feature/devsu 2144 column names update by @elewis2 in #133
• shorten main test by @elewis2 in #135
• Bugfix/devsu 2144 handle out of sync column names by @elewis2 in #136
• Release/v3.12.0 by @elewis2 in #137

Full Changelog: v3.11.1...v3.12.0

Release v3.11.1

What's Changed

• Bugfix/sdev 4029 rapid report gene check failure by @dustinbleile in #129
• Release/v3.11.1 sdev 4029 variant type check err message not crash by @dustinbleile in #131

Full Changelog: v3.11.0...v3.11.1

Release v3.11.0

DEVSU-2034 - add displayName property to all variants uploaded to IPR.

Release v3.10.0

Improvements:

• Refactor code using functions from pori_graphkb_python v1.11.0 for better speed & testing.
• Remove redundant nonsense/misense category checks.

What's Changed

• Back merge master -> develop by @dustinbleile in #117
• Gero 331 statement match updates by @dustinbleile in #118
• GERO-299 - refactor - remove code trapping nonsense/missense miscateg… by @dustinbleile in #119
• GERO-337 - setup.cfg - remove pandas<2 restriction. by @dustinbleile in #122
• Improvement/gero 337 get gene info graphkb 1.11.0 by @dustinbleile in #123
• Release/v3.10.0 gero 337 get gene info graphkb 1.11.0 by @dustinbleile in #124

Full Changelog: v3.9.0...v3.10.0

Release v3.9.0

What's Changed

New Features:

• GERO-296 - Graphkb matching of 'high mutation burden' signature category statements to tmburMutationBurden
• GERO-307 - upload structural variant rnaAltCount and rnaDepth values to ipr
• GERO-330/DEVSU-1885 - improvement - autocorrect hgvsGenomic deletions described as replacement by nothing.

Full Changelog: v3.8.0...v3.9.0

Release v3.8.0

New Features

• GERO-318 - 'approvedTherapy' category derived from IPR-A evidence_level equivalence. More inclusive of new evidence sources than the previous definition.
• content.spec.json updates:
• smallMutation - tumourAltCopies & tumourRefCopies
• copyVariants - size - (M bases)
• structualVariants - frame, library, mavis_product_id

What's Changed

• Backmerge of master into develop by @dustinbleile in #110
• GERO-318 - all IPR-A evidence equivalents are considered 'approvedTherapy' by @dustinbleile in #107
• Gero 321 content spec json updates by @dustinbleile in #111
• Release/v3.8.0 approved levels from ipr a by @dustinbleile in #112

Full Changelog: v3.7.1...v3.8.0

v3.7.1

Improvements:

• update inputs.py and ipr/content.spec.json variant details that can currently be uploaded to ipr:
• comments and library on most variants
• structuralVariants: tumourDepth and tumourAltCount
• copyVariants: germline

What's Changed

• Back merge master into develop by @dustinbleile in #106
• Feature/gero 307 sv ref alt count by @dustinbleile in #108
• Release/v3.7.1 content spec updates by @dustinbleile in #109

Full Changelog: v3.7.0...v3.7.1