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extractInterEDAMLinks

R script to extract the following information from the bio.tools content and the EDAM ontology

  • Links between data and format from tool annotations in bio.tools, given by EDAM data+format combinations in input/output functions
  • Already given links in EDAM given by the is_format_of attribute
  • Parent terms of EDAM formats

There at least two aims:

  • Annotate corresponding data term(s) to each EDAM format
    • Identify and remove data without format
  • Widen concept to include has_topic and other relationships between EDAM

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