setup.py

import json
from pathlib import Path

from setuptools import find_namespace_packages, setup

# Get the long description from the README file
ROOT_DIR = Path(__file__).parent.resolve()
long_description = (ROOT_DIR / "README.md").read_text(encoding="utf-8")
VERSION_FILE = ROOT_DIR / "bioimageio" / "core" / "VERSION"
VERSION = json.loads(VERSION_FILE.read_text())["version"]


_ = setup(
    name="bioimageio.core",
    version=VERSION,
    description="Python functionality for the bioimage model zoo",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/bioimage-io/core-bioimage-io-python",
    author="Bioimage Team",
    classifiers=[
        "Development Status :: 3 - Alpha",
        "Intended Audience :: Developers",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Programming Language :: Python :: 3.11",
        "Programming Language :: Python :: 3.12",
    ],
    packages=find_namespace_packages(exclude=["tests"]),
    install_requires=[
        "bioimageio.spec ==0.5.3.3",
        "imageio>=2.10",
        "loguru",
        "numpy",
        "pydantic-settings >=2.3",
        "pydantic",
        "python-dotenv",
        "requests",
        "ruyaml",
        "tqdm",
        "typing-extensions",
        "xarray",
    ],
    include_package_data=True,
    extras_require={
        "pytorch": ["torch>=1.6", "torchvision", "keras>=3.0"],
        "tensorflow": ["tensorflow", "keras>=2.15"],
        "onnx": ["onnxruntime"],
        "dev": [
            "black",
            # "crick",  # currently requires python<=3.9
            "filelock",
            "jupyter",
            "jupyter-black",
            "matplotlib",
            "keras>=3.0",
            "onnxruntime",
            "packaging>=17.0",
            "pre-commit",
            "pdoc",
            "psutil",  # parallel pytest with 'pytest -n auto'
            "pyright",
            "pytest-cov",
            "pytest-xdist",  # parallel pytest
            "pytest",
            "torch>=1.6",
            "torchvision",
        ],
    },
    project_urls={
        "Bug Reports": "https://github.com/bioimage-io/core-bioimage-io-python/issues",
        "Source": "https://github.com/bioimage-io/core-bioimage-io-python",
    },
    entry_points={"console_scripts": ["bioimageio = bioimageio.core.__main__:main"]},
)