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@fredjarlier fredjarlier released this 23 Mar 09:39
· 68 commits to master since this release
version-1.2
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Learn about vigilant mode.
  • Add an option -f to fixe the mate score, quality and cigar (like samtools fixmate -m does).
    Usefull for compatibility with future mpiMarkdup or samtools markdup. When -f is set there is no more discordant.sam.
    A typical workflow is mpiBWAByChr (f) + mpiSort (u + b) + samtools index + samtools markdup
    or mpiBWAByChr (f) + mpiMarkdup (issue #31)
  • Add the option -K to set the number of bases to analyse (used for reproducibility) (issue #32).
  • Fix a bug for offset read initialization and invalid free (issue #34)
  • Fix load balancing (issue #30)
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