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update upset plots

update upset plots #14

Triggered via push August 15, 2024 13:54
Status Failure
Total duration 35m 48s
Billable time 1h 36m
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check-bioc.yml

on: push
Matrix: build-check
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15 errors and 61 warnings
windows-latest (devel)
processing vignette 'Extending_MetMashR.Rmd' failed with diagnostics:
windows-latest (devel)
processing vignette 'annotate_mixtures.Rmd' failed with diagnostics:
windows-latest (devel)
processing vignette 'exploring_mtox.Rmd' failed with diagnostics:
windows-latest (devel)
Vignette re-building failed.
windows-latest (devel)
Failed to install 'MetMashR' from local:
windows-latest (devel)
Process completed with exit code 1.
macOS-latest (devel)
--- re-building ‘annotate_mixtures.Rmd’ using rmarkdown
macOS-latest (devel)
processing vignette 'annotate_mixtures.Rmd' failed with diagnostics:
macOS-latest (devel)
processing vignette 'exploring_mtox.Rmd' failed with diagnostics:
macOS-latest (devel)
processing vignette 'Extending_MetMashR.Rmd' failed with diagnostics:
macOS-latest (devel)
processing vignette 'using_MetMashR.Rmd' failed with diagnostics:
macOS-latest (devel)
Vignette re-building failed.
macOS-latest (devel)
Failed to install 'MetMashR' from local:
macOS-latest (devel)
Process completed with exit code 1.
ubuntu-latest (devel)
Process completed with exit code 1.
windows-latest (devel)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
windows-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/windows/contrib/4.5:
windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/windows/contrib/4.5:
macOS-latest (devel)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
harfbuzz 9.0.0 is already installed and up-to-date. To reinstall 9.0.0, run: brew reinstall harfbuzz
macOS-latest (devel)
macOS's Gatekeeper has been disabled for this Cask
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/bioc/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-latest (devel)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ubuntu-latest (devel)
No files were found with the provided path: check. No artifacts will be uploaded.