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raw group

• group with >=5 sequences in it

analyzed group

• a raw group that hasn't been removed by the contamination filter

"true" mutation

• belongs to a raw group
• mitomap position is between (16560-16569 inclusively) or (1-279 inclusively)
• is present in >=75% of sequences in a group
• is one of (A or C or T or G) to (A or C or T or G)

Somatic substitution (a collection of true mutations, at a given position and and mutation type (<2%))

• collection of "true" mutations
• All at same mitomap position
• All same type of mutation (ex: A_to_G)
• collection must have (members/number of groups analyzed) <0.02

Heteroplasmy substitution (a collection of true mutations, at a given position and and mutation type (>=2%))

• collection of "true" mutations
• All at same mitomap position
• All same type of mutation (ex: T_to_A)
• collection must have (members/number of groups analyzed) >=0.02