Sorted BED file alphabetically

This release sorts the BED file alphabetically as the BAM files are. This allows to use the -sorted option for coverageBed which speeds up the computation.

What's Changed

• Sorting the bed file alphanumerically by @asboner in #5

Full Changelog: v1.2.0...v1.2.1

Skipping alignment

This release allows for skipping the alignment process if BAM files are already available

Full Changelog: v1.2.0-alpha...v1.2.1-alpha

Skipping alignment

This release allows to skip the alignment step if the BAM files are already available.

What's Changed

• Bio 354 skipping alignment by @asboner in #4

Full Changelog: 1.1.0...v1.2.0

New BED file

This release includes a new BED file for the ERVs and allows to run from the BAM files if already computed.

Nextflow release

This release allows to run ERVmap with Nextflow.

What's Changed

• Nextflow by @asboner in #1
• Update dockerfile for GitHub actions by @alexsigaras in #3
• Bio 330 star storage fix by @asboner in #2

New Contributors

• @alexsigaras made their first contribution in #3

Full Changelog: 1.0.0...1.1.0

First official release in GitHub

This release include the first docker image that allows to align the reads and count the ERVs in human.

Full Changelog: https://github.com/eipm/ERVmap/commits/1.0.0