Developed for northstar (biorXiv).
Files are in loom format.
For programmatic access, see the TSV table.
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Brain atlas by Darmanis et al. 2015
- Technology: SmartSeq2
- full: averages ⎮ subsamples
- without fetal data: averages ⎮ subsamples
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Pancreas ageing atlas by Enge et al. 2017
- Technology: SmartSeq2
- full: averages ⎮ subsamples
- reannotated: averages ⎮ subsamples
-
Pancreas atlas by Lawlor et al. 2016
- Technology: Fluidigm C1
- no diabetes patients: averages ⎮ subsamples
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Pancreas atlas by Baron et al. 2016
- Technology: InDrop
- no diabetes patients: averages ⎮ subsamples
-
Blood (peripheral) by Zanini, Robinson et al. 2018
- Technology: SmartSeq2
- healthy controls: averages ⎮ subsamples
-
B cells (peripheral blood) by Croote et al. 2019
- Technology: SmartSeq2
- half (higher quality): averages ⎮ subsamples
-
Liver atlas by Aizarani et al. 2019
- Technology: mCEL-Seq2
- all identifiable clusters: averages ⎮ subsamples
-
Intestine (colon) atlas by Smillie et al. 2019
- Technology: 10X Genomics 3'
- healthy controls: averages ⎮ subsamples
-
Tabula muris by Tabula Muris Consortium 2018
- Technology: SmartSeq2
- Aorta: averages ⎮ subsamples
- Bladder: averages ⎮ subsamples
- Brain: averages ⎮ subsamples
- Diaphragm: averages ⎮ subsamples
- Fat: averages ⎮ subsamples
- Heart: averages ⎮ subsamples
- Intestine: averages ⎮ subsamples
- Kidney: averages ⎮ subsamples
- Liver: averages ⎮ subsamples
- Lung: averages ⎮ subsamples
- Mammary gland: averages ⎮ subsamples
- Marrow: averages ⎮ subsamples
- Muscle (skeletal): averages ⎮ subsamples
- Pancreas: averages ⎮ subsamples
- Skin: averages ⎮ subsamples
- Spleen: averages ⎮ subsamples
- Thymus: averages ⎮ subsamples
- Tongue: averages ⎮ subsamples
- Trachea: averages ⎮ subsamples
- Technology: SmartSeq2
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Brain atlas by Zeisel et al. 2018 (mousebrain.org)
- Technology: 10X Genomics 3'
- full: averages
- Note: this dataset has many neuronal types and is therefore quite large.