update floss #182
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This action will test the code coverage of all R files that contains examples and | |
| # Unit tests. This will be triggered using `workflow_run` after a successful run of | |
| # the Lint action. | |
| # | |
| # This file must live on `main` branch, and any version in other branches will not | |
| # be triggered. This is a "feature" of GH-actions. The workaround for working with | |
| # the right branch is using the 'github.event.workflow_run.head_branch' on action | |
| # 'actions/checkout'. Thanks to Potherca https://stackoverflow.com/a/65081720/2195337 | |
| name: Covr | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - develop | |
| workflow_dispatch: | |
| repository_dispatch: | |
| concurrency: | |
| group: coverage | |
| cancel-in-progress: true | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| if: ${{ contains(github.event.head_commit.message, 'coverage') }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RENV_PATHS_ROOT: ~/.local/share/renv | |
| CODECOV_TOKEN: "4676dbf0-8296-4fd8-9542-a476503b0118" | |
| steps: | |
| - name: Checking out shallow repository | |
| uses: actions/checkout@v2 | |
| with: | |
| ref: ${{ github.event.workflow_run.head_branch }} | |
| - run: git branch | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install other dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libgit2-dev libharfbuzz-dev libcurl4-openssl-dev \ | |
| libfribidi-dev libzmq3-dev libmagick++-dev | |
| - name: Setting up R installation | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setting up pandoc and pandoc-citeproc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Cache R packages | |
| uses: actions/cache@v2.1.4 | |
| id: cache-packages | |
| with: | |
| path: ${{ env.RENV_PATHS_ROOT }} | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }}-targets-v2 | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Install dependencies | |
| run: | | |
| if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv") | |
| Sys.unsetenv("GITHUB_PAT") | |
| renv::restore() | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |