use devel docker image for ubuntu

gagneurlab · Feb 11, 2024 · e12c8c7 · e12c8c7
1 parent 67fbd5c
commit e12c8c7
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml
@@ -52,8 +52,9 @@ jobs:
       fail-fast: false
       matrix:
         config:
+          # This needs to be updated after each Bioconductor release. Please make sure we have the matching R and Bioc versions in it. 
           - { os: ubuntu-latest, r: '4.3', bioc: '3.18', cont: "bioconductor/bioconductor_docker:RELEASE_3_18", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
-          - { os: ubuntu-latest, r: 'next', bioc: '3.18', cont: "bioconductor/bioconductor_docker:RELEASE_3_18", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
+          - { os: ubuntu-latest, r: 'next', bioc: '3.19', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
           - { os: macOS-latest, r: '4.3', bioc: '3.18'}
           - { os: windows-latest, r: '4.3', bioc: '3.18'}
           ## Check https://github.com/r-lib/actions/tree/master/examples
@@ -313,7 +314,7 @@ jobs:
         if: failure()
         uses: actions/upload-artifact@master
         with:
-          name: ${{ runner.os }}-biocversion-RELEASE_3_16-r-4.2-results
+          name: ${{ runner.os }}-biocversion-RELEASE_3_18-r-4.3-results
           path: check
 
         ## Note that DOCKER_PASSWORD is really a token for your dockerhub