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compar v1.3.0-beta.3

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@hmftools-release-bot hmftools-release-bot released this 01 Nov 12:53
· 264 commits to master since this release

Description of release compar v1.3.0-beta.3

DEV-3784: Add liftover for somatic disruptions and germline variants and disruptions.
Make compatible with Cuppa v2.
DEV-4061: Add many fields and new categories: PEACH, VIRUS, TUMOR_FLAGSTAT, GERMLINE_FLAGSTAT, TUMOR_BAM_METRICS, GERMLINE_BAM_METRICS, SNP_GENOTYPE.
Removed support for old format germline SV file.
Adjusted disruption comparison to be less dependent on exact position.
DEV-4082: Create INVALID_ERROR output when error is thrown in comparison
DEV-4084: Fix problems in disruption comparison
Add categories: CDR3_SEQUENCE, CDR3_LOCUS_SUMMARY, TELOMERE_LENGTH

Full Changelog: compar-v1.2...compar-v1.3.0-beta.3