document hamamatsu a bit better, add ndpi #108
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| name: Selenium tests | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'doc/**' | |
| pull_request: | |
| paths-ignore: | |
| - 'doc/**' | |
| schedule: | |
| # Run at midnight UTC every Tuesday | |
| - cron: '0 0 * * 2' | |
| env: | |
| GALAXY_CONFIG_GALAXY_URL_PREFIX: '/galaxypf' | |
| GALAXY_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8' | |
| GALAXY_TEST_RAISE_EXCEPTION_ON_HISTORYLESS_HDA: '1' | |
| GALAXY_TEST_SELENIUM_RETRIES: 1 | |
| GALAXY_TEST_SKIP_FLAKEY_TESTS_ON_ERROR: 1 | |
| YARN_INSTALL_OPTS: --frozen-lockfile | |
| GALAXY_CONFIG_SQLALCHEMY_WARN_20: '1' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| setup-selenium: | |
| uses: ./.github/workflows/setup_selenium.yaml | |
| build-client: | |
| uses: ./.github/workflows/build_client.yaml | |
| test: | |
| name: Test | |
| needs: [setup-selenium, build-client] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.8'] | |
| chunk: [0, 1, 2] | |
| services: | |
| postgres: | |
| image: postgres:13 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: postgres | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - if: github.event_name == 'schedule' | |
| run: | | |
| echo "GALAXY_CONFIG_OVERRIDE_METADATA_STRATEGY=extended" >> $GITHUB_ENV | |
| echo "GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY=true" >> $GITHUB_ENV | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: 'galaxy root' | |
| - uses: actions/setup-node@v4 | |
| with: | |
| node-version: '18.12.1' | |
| cache: 'yarn' | |
| cache-dependency-path: 'galaxy root/client/yarn.lock' | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| cache-dependency-path: 'galaxy root/requirements.txt' | |
| - name: Get full Python version | |
| id: full-python-version | |
| shell: bash | |
| run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT | |
| - name: Cache galaxy venv | |
| uses: actions/cache@v4 | |
| with: | |
| path: 'galaxy root/.venv' | |
| key: gxy-venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-selenium | |
| - name: Restore client cache | |
| uses: actions/cache@v4 | |
| with: | |
| key: galaxy-static-${{ needs.build-client.outputs.commit-id }} | |
| path: 'galaxy root/static' | |
| - name: Run tests | |
| run: ./run_tests.sh --coverage -selenium lib/galaxy_test/selenium -- --num-shards=3 --shard-id=${{ matrix.chunk }} | |
| working-directory: 'galaxy root' | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| flags: selenium | |
| working-directory: 'galaxy root' | |
| - uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: Selenium test results (${{ matrix.python-version }}, ${{ matrix.chunk }}) | |
| path: 'galaxy root/run_selenium_tests.html' | |
| - uses: actions/upload-artifact@v4 | |
| if: failure() | |
| with: | |
| name: Selenium debug info (${{ matrix.python-version }}, ${{ matrix.chunk }}) | |
| path: 'galaxy root/database/test_errors' |