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Releases: hubmapconsortium/ccf-asct-reporter

2.7.0

15 Jun 12:49
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  • HRA Release 5 (v1.4) ASCT+B Tables added
  • OMAP support

2.5.0

17 Jun 15:52
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2.5.0 - 2022-06-17

  • Added support for selecting CCF Release v1.2 tables (Published June 2022)
  • Too many changes to enumerate here. See comparison

2.4.0

06 Aug 19:04
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2.4.0 - 2021-08-06

Added in 2.4.0

  • Comparison feature now uses both ID and Name for node comparison
  • AS Count in reports no longer include Body
  • Added ASCT+B API Documentation page
  • Added CSV file upload capability to Playground
  • Refactored routes into new files in ASCTB API

2.3.0

22 Jul 16:56
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2.3.0 - 2021-07-22

Added in 2.3.0

  • Added export to JSON graph to the ASCT+B API and UI (export menu)
  • Better routes for documentation pages (/docs/1 => /docs/about)
  • Added Select All button to the search dropdown
  • Added Ontology ID and label to the Body node
  • Upgraded dependencies to Angular 12
  • Added linting to the ASCT+B API
  • Migrated from tslint to eslint
  • Bug fixes and code cleanup

2.2.0

02 Jul 16:22
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2.2.0 - 2021-07-02

Added in 2.2.0

  • Multiple levels of cell types (CT) are now supported in the Table Format and User Interface. Note: The Cell Type hierarchy is currently flattened in the visualization; future work includes visualizing the hierarchical structure.
  • Five biomarker types are now supported in the Table format and User Interface: Genes (BGene), Proteins (BProtein), Lipids (BLipid), Metabolites (BMetabolites) and Proteoforms (BProteoform)
  • CSV URLs can now be used in the organ dropdown, compare, and playground features
  • Clicking on a term label now fetches a description and IRI link for terms across UBERON, FMA, CL, and HGNC ontologies.

2.1.0

23 Jun 13:51
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NOTES

  • Added FMA ontology term support
  • Added more biomarker types (proteins and lipids)
  • Added shapes to biomarkers in the visualization
  • Improved parsing of the ASCT+B data tables
  • Minor UI improvements / bug fixes
  • Counts by organ are shown in the report tab when all organs are selected
  • Added discrepency labels
  • New Demo Video
  • Alert users when they add a Google Sheets Share URL instead of the Browser URL
  • Fixed a regression in the ASCT+B API homepage
  • Duplicate ID's can be highlighed when ID duplicates toggle is on

2.0.0

07 Apr 15:16
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Notes

  • Redesign of the UI
  • Usability refactoring through user testing
  • Updated architecture with state manager
  • Brand new playground feature
  • Increased interactivity of the graph with into sheets and DOI
  • Filtering biomarkers based on their protein type
  • Improved google analytics
  • Updated legend to show the values of the uploaded compare sheets
  • Revamped report generator
  • Documentation added in the Reporter

v1.1.0

02 Dec 20:40
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Added

  • Organ selector from the Home Page Button
  • HGNC Links for biomarkers (for heart and spleen).
  • Version selector for the data.
  • Compare Sheet feature.
  • Dashed links for nodes with multi-parent nodes.
  • Full Screen Mode
  • Visualization Control
  • Search feature
  • Search Filters
  • Integrated Google Analytics

Changed

  • Vega config to separate folders
  • Biomarker field in the Report.
  • Remove character limit of names on hover/click.
  • Reduce opacity of nodes not currently selected in the visualization.
  • Text from 'See Debug Log' to 'Multi-Parent Node'
  • Brain Organ Sheet Link

Fixed

  • Error when shifting from Indented list to tree vis
  • Dropdown names for the menu on the navbar in mobile mode.
  • Mat-tab body text left aligned.
  • Error handling when visualization failed to render.
  • Compare sheets header count from 1 to 11.
  • XLSX file generation to make it more efficient and robust when any of the structures are not present.
  • Dialogs are now independent and are not centrally controlled.
  • Snackbar messages
  • Data Miner to handle links that are private and respond with appropriate messages.

v1.0.0

05 Aug 21:39
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  • Added ASCT+B Data Miner
  • Refactored Code
  • Update documentation

Update 7.30.2020

30 Jul 17:29
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  • Lung organ table is added to the Reporter.
  • The algorithm now skips the first 11 ​rows. This will change in the future to the first 10 rows, once the headers are standardized.
  • ​Tooltip shows more data, namely - indegree, outdegree and Uberon/Link if present.
  • Fixed background color of the vis after download.
  • Added sub structure column for Kidney that was previously missing.
  • Added responsiveness to the navigation drawer to take up the full width when screen is smaller.
  • Added responsiveness to the toolbar to collapse to options width of the screen is smaller.