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trying to speed up the imputation algorithm #313

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trying to speed up the imputation algorithm

trying to speed up the imputation algorithm #313

Triggered via push October 30, 2023 04:12
@jeffersonfpariljeffersonfparil
pushed 02046fe
main
Status Success
Total duration 27m 25s
Artifacts –

rust.yml

on: push
Compile
1m 26s
Compile
Matrix: Test
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53 warnings
Compile
The following actions uses node12 which is deprecated and will be forced to run on node16: ATiltedTree/setup-rust@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Compile: src/gwas/correlation_test.rs#L21
unnecessary parentheses around `if` condition
Compile: src/imputation/adaptive_ld_knn_imputation.rs#L4
unused imports: `ErrorKind`, `Error`
Compile: src/imputation/set_missing_by_depth.rs#L1
unused import: `ndarray::prelude::*`
Compile: src/imputation/set_missing_by_depth.rs#L2
unused imports: `ErrorKind`, `Error`
Compile: src/popgen/gudmc.rs#L5
unused import: `Zip`
Compile: src/popgen/gudmc.rs#L7
unused import: `statrs::statistics::Statistics`
Compile: src/popgen/pi.rs#L5
unused imports: `ErrorKind`, `Error`
Compile: src/gp/penalise.rs#L5
unused import: `ndarray_linalg`
Compile: src/base/helpers.rs#L361
variable does not need to be mutable
Compile: src/imputation/set_missing_by_depth.rs#L11
unused variable: `p`
Test (windows-latest, stable)
The following actions uses node12 which is deprecated and will be forced to run on node16: ATiltedTree/setup-rust@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test (windows-latest, stable): src/gwas/correlation_test.rs#L21
unnecessary parentheses around `if` condition
Test (windows-latest, stable): src/imputation/adaptive_ld_knn_imputation.rs#L4
unused imports: `ErrorKind`, `Error`
Test (windows-latest, stable): src/imputation/set_missing_by_depth.rs#L1
unused import: `ndarray::prelude::*`
Test (windows-latest, stable): src/imputation/set_missing_by_depth.rs#L2
unused imports: `ErrorKind`, `Error`
Test (windows-latest, stable): src/popgen/gudmc.rs#L5
unused import: `Zip`
Test (windows-latest, stable): src/popgen/gudmc.rs#L7
unused import: `statrs::statistics::Statistics`
Test (windows-latest, stable): src/popgen/pi.rs#L5
unused imports: `ErrorKind`, `Error`
Test (windows-latest, stable): src/gp/penalise.rs#L5
unused import: `ndarray_linalg`
Test (windows-latest, stable): src/base/helpers.rs#L361
variable does not need to be mutable
Test (windows-latest, stable): src/imputation/set_missing_by_depth.rs#L11
unused variable: `p`
Test (windows-latest, stable): src/gp/penalise.rs#L674
unused import: `ndarray::concatenate`
Test (windows-latest, stable): src/gwas/correlation_test.rs#L21
unnecessary parentheses around `if` condition
Test (windows-latest, stable): src/gwas/mle.rs#L466
unused import: `super::*`
Test (windows-latest, stable): src/gwas/ols.rs#L444
unused import: `std::slice::Iter`
Test (windows-latest, stable): src/imputation/adaptive_ld_knn_imputation.rs#L4
unused imports: `ErrorKind`, `Error`
Test (windows-latest, stable): src/imputation/set_missing_by_depth.rs#L1
unused import: `ndarray::prelude::*`
Test (windows-latest, stable): src/imputation/set_missing_by_depth.rs#L2
unused imports: `ErrorKind`, `Error`
Test (windows-latest, stable): src/popgen/gudmc.rs#L5
unused import: `Zip`
Test (windows-latest, stable): src/popgen/gudmc.rs#L7
unused import: `statrs::statistics::Statistics`
Test (windows-latest, stable): src/popgen/pi.rs#L5
unused imports: `ErrorKind`, `Error`
Test (ubuntu-latest, stable)
The following actions uses node12 which is deprecated and will be forced to run on node16: ATiltedTree/setup-rust@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test (ubuntu-latest, stable): src/gwas/correlation_test.rs#L21
unnecessary parentheses around `if` condition
Test (ubuntu-latest, stable): src/imputation/adaptive_ld_knn_imputation.rs#L4
unused imports: `ErrorKind`, `Error`
Test (ubuntu-latest, stable): src/imputation/set_missing_by_depth.rs#L1
unused import: `ndarray::prelude::*`
Test (ubuntu-latest, stable): src/imputation/set_missing_by_depth.rs#L2
unused imports: `ErrorKind`, `Error`
Test (ubuntu-latest, stable): src/popgen/gudmc.rs#L5
unused import: `Zip`
Test (ubuntu-latest, stable): src/popgen/gudmc.rs#L7
unused import: `statrs::statistics::Statistics`
Test (ubuntu-latest, stable): src/popgen/pi.rs#L5
unused imports: `ErrorKind`, `Error`
Test (ubuntu-latest, stable): src/gp/penalise.rs#L5
unused import: `ndarray_linalg`
Test (ubuntu-latest, stable): src/base/helpers.rs#L361
variable does not need to be mutable
Test (ubuntu-latest, stable): src/imputation/set_missing_by_depth.rs#L11
unused variable: `p`
Test (ubuntu-latest, stable): src/gp/penalise.rs#L674
unused import: `ndarray::concatenate`
Test (ubuntu-latest, stable): src/gwas/correlation_test.rs#L21
unnecessary parentheses around `if` condition
Test (ubuntu-latest, stable): src/gwas/mle.rs#L466
unused import: `super::*`
Test (ubuntu-latest, stable): src/gwas/ols.rs#L444
unused import: `std::slice::Iter`
Test (ubuntu-latest, stable): src/imputation/adaptive_ld_knn_imputation.rs#L4
unused imports: `ErrorKind`, `Error`
Test (ubuntu-latest, stable): src/imputation/set_missing_by_depth.rs#L1
unused import: `ndarray::prelude::*`
Test (ubuntu-latest, stable): src/imputation/set_missing_by_depth.rs#L2
unused imports: `ErrorKind`, `Error`
Test (ubuntu-latest, stable): src/popgen/gudmc.rs#L5
unused import: `Zip`
Test (ubuntu-latest, stable): src/popgen/gudmc.rs#L7
unused import: `statrs::statistics::Statistics`
Test (ubuntu-latest, stable): src/popgen/pi.rs#L5
unused imports: `ErrorKind`, `Error`