Merge branch 'main' of https://github.com/materialsproject/fireworks …

…into mongomock

.circleci/config.yml

@@ -26,35 +26,7 @@ jobs:
             pip install .[workflow-checks,graph-plotting,flask-plotting]
             pytest fireworks
 
-  pytest_pymongo4:
-    working_directory: ~/fireworks
-    docker:
-      - image: continuumio/miniconda3:4.6.14
-      - image: circleci/mongo:latest
-    steps:
-      - checkout
-      - run:
-          command: |
-            export PATH=$HOME/miniconda3/bin:$PATH
-            conda config --set always_yes yes --set changeps1 no
-            conda update -q conda
-            conda info -a
-            conda create -q -n test-environment python=3.8
-            source activate test-environment
-            conda update --quiet --all
-            pip install --quiet --ignore-installed -r requirements.txt -r requirements-ci.txt
-      - run:
-          name: Run fireworks tests
-          command: |
-            export PATH=$HOME/miniconda3/bin:$PATH
-            source activate test-environment
-            pip install --quiet -e .
-            pip install --quiet --upgrade pymongo
-            pytest fireworks
-
 workflows:
   version: 2
   build_and_test:
-    jobs:
-      - pytest
-      - pytest_pymongo4
+    jobs: [pytest]

.github/workflows/test.yml

@@ -0,0 +1,36 @@
+name: Test
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+jobs:
+  pytest:
+    runs-on: ubuntu-latest
+
+    services:
+      mongodb:
+        image: mongo
+        ports:
+          - 27017:27017
+
+    steps:
+      - name: Checkout repo
+        uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.8
+
+      - name: Install dependencies
+        run: |
+          pip install -r requirements.txt -r requirements-ci.txt
+
+      - name: Run fireworks tests
+        shell: bash -l {0}
+        run: |
+          pip install .[workflow-checks,graph-plotting,flask-plotting]
+          pytest fireworks

.pre-commit-config.yaml

@@ -2,7 +2,7 @@ exclude: ^docs
 
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.3
+    rev: v0.3.5
     hooks:
       - id: ruff
         args: [--fix, --ignore, D]

README.md

@@ -1,4 +1,6 @@
-# <img alt="FireWorks" src="docs_rst/_static/FireWorks_logo.png" width="250">
+<h1 align="center">
+  <img alt="FireWorks" src="docs_rst/_static/fireworks-logo.svg" width="350">
+</h1>
 
 FireWorks stores, executes, and manages calculation workflows.
 
@@ -9,7 +11,8 @@ FireWorks stores, executes, and manages calculation workflows.
 If you like FireWorks, you might also like [rocketsled](https://github.com/hackingmaterials/rocketsled).
 
 If you find FireWorks useful, please consider citing the paper:
-```
+
+```txt
 Jain, A., Ong, S. P., Chen, W., Medasani, B., Qu, X., Kocher, M., Brafman, M.,
 Petretto, G., Rignanese, G.-M., Hautier, G., Gunter, D., and Persson, K. A.
 (2015) FireWorks: a dynamic workflow system designed for high-throughput

docs_rst/conf.py

@@ -183,11 +183,11 @@
 
 latex_elements = {
     # The paper size ('letterpaper' or 'a4paper').
-    #'papersize': 'letterpaper',
+    # 'papersize': 'letterpaper',
     # The font size ('10pt', '11pt' or '12pt').
-    #'pointsize': '10pt',
+    # 'pointsize': '10pt',
     # Additional stuff for the LaTeX preamble.
-    #'preamble': '',
+    # 'preamble': '',
 }
 
 # Grouping the document tree into LaTeX files. List of tuples
@@ -309,5 +309,5 @@ def skip(app, what, name, obj, skip, options):
 
 
 # AJ: a hack found online to get __init__ to show up in docs
-def setup(app):
+def setup(app) -> None:
     app.connect("autodoc-skip-member", skip)

docs_rst/config_tutorial.rst

@@ -77,6 +77,7 @@ A few basic parameters that can be tweaked are:
 * ``WEBSERVER_PORT: 5000`` - the default port on which to run the web server
 * ``QUEUE_JOBNAME_MAXLEN: 20`` - the max length of the job name to send to the queuing system (some queuing systems limit the size of job names)
 * ``MONGOMOCK_SERVERSTORE_FILE`` - path to a non-empty JSON file, if set then mongomock will be used instead of MongoDB; this file should be initialized with '{}'
+* ``ROCKET_STREAM_LOGLEVEL: INFO`` - the streaming log level of the rocket launcher logger (valid values: DEBUG, INFO, WARNING, ERROR, CRITICAL)
 
 Parameters that you probably shouldn't change
 ---------------------------------------------

docs_rst/firetask_tutorial.rst

@@ -150,7 +150,7 @@ Let's explore custom Firetasks with an example: a custom Python script for addin
            input_array = fw_spec['input_array']
            m_sum = sum(input_array)
 
-           print(f"The sum of {input_array} is: {m_sum}"
+           print(f"The sum of {input_array} is: {m_sum}")
 
            return FWAction(stored_data={'sum': m_sum}, mod_spec=[{'_push': {'input_array': m_sum}}])