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Matsen Group

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  1. gctree gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    Python 16 2

  2. sumrep sumrep Public

    Summary statistics for repertoires

    R 16 6

  3. vampire vampire Public

    🧛 Deep generative models for TCR sequences 🧛

    Python 16 4

  4. olmsted olmsted Public

    B-cell repertoire and clonal family tree explorer

    JavaScript 15 4

  5. phippery phippery Public

    Python 14 2

  6. gapml gapml Public

    Python 11 4

Repositories

Showing 10 of 108 repositories
  • netam Public

    Neural networks to model BCR affinity maturation

    matsengrp/netam’s past year of commit activity
    Python 1 0 6 0 Updated Nov 16, 2024
  • dnsm-json-database Public
    matsengrp/dnsm-json-database’s past year of commit activity
    Python 0 0 0 0 Updated Nov 14, 2024
  • larch Public

    Inference and manipulation of history DAGs

    matsengrp/larch’s past year of commit activity
    C++ 2 MIT 2 14 2 Updated Nov 14, 2024
  • thrifty-models Public
    matsengrp/thrifty-models’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 13, 2024
  • phip-flow Public

    A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets

    matsengrp/phip-flow’s past year of commit activity
    Python 11 MIT 6 0 0 Updated Nov 7, 2024
  • phippery Public
    matsengrp/phippery’s past year of commit activity
    Python 14 MIT 2 0 0 Updated Nov 7, 2024
  • usher Public Forked from yatisht/usher

    Ultrafast Sample Placement on Existing Trees

    matsengrp/usher’s past year of commit activity
    C++ 0 MIT 42 1 0 Updated Oct 24, 2024
  • phylostability Public
    matsengrp/phylostability’s past year of commit activity
    Python 1 0 0 0 Updated Oct 1, 2024
  • gctree2-validation-plots Public
    matsengrp/gctree2-validation-plots’s past year of commit activity
    Python 0 0 0 0 Updated Sep 26, 2024
  • bcr-phylo-benchmark Public
    matsengrp/bcr-phylo-benchmark’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 8 3 1 Updated Sep 20, 2024
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