Initial commit

.github/workflows/check-qmd-render.yaml

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+name: Check whether the files render
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  render-slides:
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        file:
+          - slides
+          - report
+
+    container:
+      image: rocker/tidyverse:4.4.0
+
+    steps:
+      # Check out the repository (git clone)
+      - uses: actions/checkout@v4
+
+      # Install dependencies (R packages)
+      - name: Install dependencies
+        run: |
+          install2.r data.table slurmR epiworldR
+    
+      # Render the slides/report using quarto
+      - name: Render ${{ matrix.file }}
+        run: |
+          quarto render ${{ matrix.file }}.qmd --to html
+    
+      # Save the rendered slides/report as an artifact
+      - name: Save as artifact
+        uses: actions/upload-artifact@v4
+        with:
+          path: ${{ matrix.file }}.html
+          name: ${{ matrix.file }}

.gitignore

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+*_cache
+*_files

README.md

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+# Template project for Advanced Programming [![Slides and report render](../../actions/workflows/check-qmd-render.yaml/badge.svg)](../../actions/workflows/check-qmd-render.yaml)
+
+The template project has the following files:
+
+- `README.md`: this file.
+- `data/`: a folder for data files.
+- `.gitignore`: a file that tells git which files to ignore.
+- `slides.qmd`: a presentation in quarto format.
+- `report.qmd`: a report in quarto format.
+- `.github/workflows/check-qmd-render.yaml`: The workflow that builds the html and pdf files. New dependencies can be added on the step "Install dependencies"; the following installs the R packages data.table and slurmR from CRAN:
+
+    ```yaml
+    - name: Install dependencies
+    run: |
+        install2.r data.table slurmR
+    ```
+
+  This workflow should complete without errors before you submit your project.
+
+## Instructions
+
+1. Use the qmd files to write your report and slides.
+
+2. Add any needed files (figures, C++, data, etc.) to the repository.
+
+2. If needed, add additional dependencies to the workflow file.
+
+3. Ensure the [report.pdf](report.pdf) and [slides.html](slides.html) files are generated.

data/README.md

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+# Data folder
+
+Any data your project holds should go here.

report.qmd

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+---
+format: pdf
+author: John Doe
+title: My fancy presentation
+subtitle: For PHS 7045
+---
+
+# Section 1
+
+## Sub-section 1
+
+```{r}
+#| label: some-code
+library(MASS)
+```

slides.qmd

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+---
+title: My fancy presentation
+subtitle: For PHS 7045
+author: John Doe
+format: revealjs
+embed-resources: true
+---
+
+# Section 1
+
+## Slide 1
+
+
+```{r}
+#| label: some-code
+library(MASS)
+library(epiworldR)
+
+```