0.4.0

This version adds a new fixed effects meta-analytic algorithm, Hedge's g, where one can estimate effect size.
Also several semi-critical bug fixes for accurately reporting the z-values in the Stouffer's test.

What's Changed

🎉 Exciting New Features

• [ENH] Add Fixed Effects Meta-Analysis with Hedges’ g by @JulioAPeraza in #894
• [ENH] Add t-statistic images as valid targets in ImageTransformer by @JulioAPeraza in #895

🐛 Bug Fixes

• [FIX] bump pymare for rounding issue by @jdkent in #897
• [FIX] Add support for IBMA estimators with t-statistic images in Reports by @JulioAPeraza in #896
• [FIX] Fix the correlation matrix computation in Stouffers and Reports by @JulioAPeraza in #901
• [FIX] bump pymare version to fix z values by @jdkent in #904

Other Changes

• [REF] Compute correlation matrix in signal voxels by @JulioAPeraza in #889
• [REF] optimize get_studies_by_mask by @jdkent in #891
• [MAINT] hyphen no longer supported by @jdkent in #899
• [MAINT] run benchmarking on estimators by @jdkent in #900
• [MAINT] update workflow and fix example by @jdkent in #905

Full Changelog: 0.3.0...0.4.0rc1

0.4.0rc1

This version adds a new fixed effects meta-analytic algorithm, Hedge's g, where one can estimate effect size.
Also several semi-critical bug fixes for accurately reporting the z-values in the Stouffer's test.

What's Changed

🎉 Exciting New Features

• Add Fixed Effects Meta-Analysis with Hedges’ g by @JulioAPeraza in #894
• Add t-statistic images as valid targets in ImageTransformer by @JulioAPeraza in #895

🐛 Bug Fixes

• [FIX] bump pymare for rounding issue by @jdkent in #897
• [FIX] Add support for IBMA estimators with t-statistic images in Reports by @JulioAPeraza in #896
• [FIX] Fix the correlation matrix computation in Stouffers and Reports by @JulioAPeraza in #901
• [FIX] bump pymare version to fix z values by @jdkent in #904

Other Changes

• [REF] Compute correlation matrix in signal voxels by @JulioAPeraza in #889
• [REF] optimize get_studies_by_mask by @jdkent in #891
• [MAINT] hyphen no longer supported by @jdkent in #899
• [MAINT] run benchmarking on estimators by @jdkent in #900
• [MAINT] update workflow and fix example by @jdkent in #905

Full Changelog: 0.3.0...0.4.0rc1

0.3.0

What's Changed

🎉 Exciting New Features

• Add correction for multiple contrasts within a study in Stouffer's IBMA by @JulioAPeraza in #882
• Add support for the concordant mode test in Fisher's and Stouffer's estimators by @JulioAPeraza in #884
• Add support for publication size weighting. General refactoring of IBMA estimators by @JulioAPeraza in #887

Other Changes

• min joblib 1.3.0 by @jdkent in #880
• Update Nilearn API _check_same_fov by @adelavega in #873
• [FIX] update codecov by @jdkent in #883
• [FIX] bump matplotlib version and update usage of get_cmap by @jdkent in #885
• [MAINT] bump cognitiveatlas version by @jdkent in #890
• Support Python 3.12 by @JulioAPeraza in #853

Full Changelog: 0.2.2...0.3.0

0.3.0rc1

What's Changed

🎉 Exciting New Features

• Add correction for multiple contrasts within a study in Stouffer's IBMA by @JulioAPeraza in #882
• Add support for the concordant mode test in Fisher's and Stouffer's estimators by @JulioAPeraza in #884
• Add support for publication size weighting. General refactoring of IBMA estimators by @JulioAPeraza in #887

Other Changes

• min joblib 1.3.0 by @jdkent in #880
• Update Nilearn API _check_same_fov by @adelavega in #873
• [FIX] update codecov by @jdkent in #883
• [FIX] bump matplotlib version and update usage of get_cmap by @jdkent in #885
• [MAINT] bump cognitiveatlas version by @jdkent in #890
• Support Python 3.12 by @JulioAPeraza in #853

Full Changelog: 0.2.2...0.2.3

0.2.2

What's Changed

This release changes the default behavior of the number of iterations chosen for the FWECorrector, we reduced the default number of montecarlo simulations from 10,000 to 5,000 as this allows for a more manageable runtime with limited impact on the stability of the results.

🎉 Exciting New Features

• Add advanced plots to IBMA report by @JulioAPeraza in #864

🐛 Bug Fixes

• Fix ridgeline plot in IBMA report by @JulioAPeraza in #863
• [FIX] tqdm not displaying on notebooks by @jdkent in #878
• [FIX] fwe docstrings by @jdkent in #868

Other Changes

• Clarify FWECorrector arguments by @adelavega in #865
• [MAINT] limit version of nilearn to 0.10.2 by @jdkent in #877
• [MAINT] use updated black by @jdkent in #876

Full Changelog: 0.2.1...0.2.2

0.2.2rc3

What's Changed

Other Changes

• [FIX] tqdm not displaying on notebooks by @jdkent in #878

Full Changelog: 0.2.2rc2...0.2.2rc3

0.2.2rc2

What's Changed

Other Changes

• [MAINT] limit version of nilearn to 0.10.2 by @jdkent in #877
• [MAINT] use updated black by @jdkent in #876

Full Changelog: 0.2.2rc1...0.2.2rc2

0.2.2rc1

What's Changed

🎉 Exciting New Features

• Add advanced plots to IBMA report by @JulioAPeraza in #864

🐛 Bug Fixes

• Fix ridgeline plot in IBMA report by @JulioAPeraza in #863

Other Changes

• Clarify FWECorrector arguments by @adelavega in #865
• [FIX] fwe docstrings by @jdkent in #868

Full Changelog: 0.2.1...0.2.2rc1

0.2.1

What's Changed

🎉 Exciting New Features

• Implement caching for Estimators and Transformers by @JulioAPeraza in #845
• Add similarity correlation matrix figure to IBMA reports by @JulioAPeraza in #852
• Support liberal mask in IBMA estimators by @JulioAPeraza in #848
• Add DoF map to IBMA report by @JulioAPeraza in #854

👎 Deprecations

• Deprecate ale_sleuth_workflow in favor of CBMAWorkflow and PairwiseCBMAWorkflow by @JulioAPeraza in #851

Enhancements

• Optimize compute_kda_ma for memory and speed by @adelavega in #857 🚀

Fixes

• [FIX] do not check id columns for image extensions by @jdkent in #860
• [FIX] bump min numpy/seaborn versions by @jdkent in #861

Other Changes

• Disable computation of probabilities by default for MKDAChi2 by @adelavega in #856

Full Changelog: 0.2.0...0.2.1

0.2.1rc2

What's Changed

Other Changes

• [FIX] bump min numpy/seaborn versions by @jdkent in #861

Full Changelog: 0.2.1rc1...0.2.1rc2