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Samplesheet validator #638

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Samplesheet validator

Samplesheet validator #638

Triggered via pull request August 8, 2024 20:26
@nschcolnicovnschcolnicov
synchronize #234
nschcolnicov:samplesheet_validator
Status Failure
Total duration 5m 17s
Artifacts –

ci.yml

on: pull_request
Choose nextflow versions to test against depending on target branch
0s
Choose nextflow versions to test against depending on target branch
Matrix: Run pipeline with test data
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11 errors and 18 warnings
Run pipeline with test data (latest-stable, bases2fastq)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, fqtk)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, bclconvert)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, bcl2fastq)
Process completed with exit code 1.
Run pipeline with test data (latest-stable, bcl2fastq)
Process completed with exit code 1.
Run pipeline with test data (latest-stable, bcl2fastq)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, kraken)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, sgdemux)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, mkfastq)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, test_pe)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, skip_tools)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run pipeline with test data (latest-stable, bases2fastq)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, bases2fastq)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run pipeline with test data (latest-stable, fqtk)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, fqtk)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run pipeline with test data (latest-stable, bclconvert)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, bclconvert)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run pipeline with test data (latest-stable, bcl2fastq)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, bcl2fastq)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run pipeline with test data (latest-stable, kraken)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, kraken)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run pipeline with test data (latest-stable, sgdemux)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, sgdemux)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run pipeline with test data (latest-stable, mkfastq)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, mkfastq)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run pipeline with test data (latest-stable, test_pe)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, test_pe)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run pipeline with test data (latest-stable, skip_tools)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-stable, skip_tools)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23