Use conda nf-test

nf-core · Aug 6, 2024 · b2af8e2 · b2af8e2
1 parent 27726a0
commit b2af8e2
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -58,7 +58,8 @@ jobs:
 
       # Run nf-test
       - name: Run nf-test
-        run: nf-test test tests/pipeline/${{ matrix.profile }}.nf.test --profile=test,docker --junitxml=test.xml
+        run: |
+          $CONDA/bin/nf-test test tests/pipeline/${{ matrix.profile }}.nf.test --profile=test,docker --junitxml=test.xml
 
       # If the test fails, output the software_versions.yml using the 'batcat' utility
       - name: Output log on failure