Merge pull request #159 from Aratz/dev

Pre-release v1.4.0
nf-core · Dec 14, 2023 · b88c7e4 · b88c7e4
2 parents 290c07b + 1588ebb
commit b88c7e4
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Showing 9 changed files with 22 additions and 20 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,6 +5,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unpublished Version / DEV]
 
+## 1.4.0 - 2023-12-14
+
 ### `Added`
 
 - [#148](https://github.com/nf-core/demultiplex/pull/148) Update CODEOWNERS to use GitHub teams
@@ -25,7 +27,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## `Removed`
 
-- Remove `public_aws_ecr` profile.
+- [#130](https://github.com/nf-core/demultiplex/pull/130) Remove `public_aws_ecr` profile.
 
 ## 1.3.2 - 2023-06-07
 

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/demultiplex/releases/tag/dev" target="_blank">nf-core/demultiplex</a>
+  This report has been generated by the <a href="https://github.com/nf-core/demultiplex/releases/tag/1.4.0" target="_blank">nf-core/demultiplex</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/demultiplex/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/demultiplex/1.4.0/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-demultiplex-methods-description":
     order: -1000

diff --git a/nextflow.config b/nextflow.config
@@ -240,7 +240,7 @@ manifest {
     description     = """Demultiplexing pipeline for Illumina sequencing data"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.4.0dev'
+    version         = '1.4.0'
     doi             = '10.5281/zenodo.7153103'
 }
 

diff --git a/tests/pipeline/bases2fastq.nf.test.snap b/tests/pipeline/bases2fastq.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions": {
         "content": [
-            "{BASES2FASTQ={bases2fastq=1.1.0.593880262, use subject to license available at elementbiosciences.com}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, UNTAR={untar=1.30}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{BASES2FASTQ={bases2fastq=1.1.0.593880262, use subject to license available at elementbiosciences.com}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, UNTAR={untar=1.30}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T16:57:34.674489"
     },
@@ -15,4 +15,4 @@
         ],
         "timestamp": "2023-12-11T16:40:05.942646"
     }
-}
+}
diff --git a/tests/pipeline/bcl2fastq.nf.test.snap b/tests/pipeline/bcl2fastq.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions": {
         "content": [
-            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T16:55:21.645426"
     },
@@ -70,4 +70,4 @@
         ],
         "timestamp": "2023-12-11T16:55:21.680453"
     }
-}
+}
diff --git a/tests/pipeline/bclconvert.nf.test.snap b/tests/pipeline/bclconvert.nf.test.snap
@@ -24,7 +24,7 @@
     },
     "software_versions": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T16:56:35.649441"
     },
@@ -36,4 +36,4 @@
         ],
         "timestamp": "2023-12-11T16:56:35.661017"
     }
-}
+}
diff --git a/tests/pipeline/fqtk.nf.test.snap b/tests/pipeline/fqtk.nf.test.snap
@@ -7,8 +7,8 @@
     },
     "software_versions": {
         "content": [
-            "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, UNTAR={untar=1.30}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, UNTAR={untar=1.30}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T17:05:36.315291"
     }
-}
+}
diff --git a/tests/pipeline/sgdemux.nf.test.snap b/tests/pipeline/sgdemux.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions": {
         "content": [
-            "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, SGDEMUX={sgdemux=1.1.1}, UNTAR={untar=1.30}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, SGDEMUX={sgdemux=1.1.1}, UNTAR={untar=1.30}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T16:59:13.85618"
     },
@@ -14,4 +14,4 @@
         ],
         "timestamp": "2023-10-17T08:01:14+0000"
     }
-}
+}
diff --git a/tests/pipeline/skip_tools.nf.test.snap b/tests/pipeline/skip_tools.nf.test.snap
@@ -1,7 +1,7 @@
 {
     "software_versions_skip_trimming": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T17:00:30.102965"
     },
@@ -95,25 +95,25 @@
     },
     "software_versions_skip_fastqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T17:02:16.631766"
     },
     "software_versions_skip_fastp_fastqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T17:02:44.134341"
     },
     "software_versions_skip_multiqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T17:03:50.096961"
     },
     "software_versions_skip_fastp": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, Workflow={nf-core/demultiplex=1.4.0dev}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.4}, CUSTOM_DUMPSOFTWAREVERSIONS={python=3.12.0, yaml=6.0.1}, FALCO={falco=1.2.1}, Workflow={nf-core/demultiplex=1.4.0}}"
         ],
         "timestamp": "2023-12-11T17:00:57.483981"
     },
@@ -139,4 +139,4 @@
         ],
         "timestamp": "2023-12-11T16:43:15.513271"
     }
-}
+}