Merge pull request #284 from atrigila/update_nf-test-0.9.2

Update to nf-test 0.9.2
nf-core · Nov 4, 2024 · dc17d88 · dc17d88
2 parents 6de9710 + 4da452b
commit dc17d88
Show file tree

Hide file tree

Showing 7 changed files with 25 additions and 22 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -12,7 +12,7 @@ on:
 env:
   NFT_DIFF: "pdiff"
   NFT_DIFF_ARGS: "--line-numbers --expand-tabs=2"
-  NFT_VER: "0.9.0"
+  NFT_VER: "0.9.2"
   NFT_WORKDIR: "~"
   NXF_ANSI_LOG: false
   NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [#275](https://github.com/nf-core/demultiplex/pull/275) Update samshee module from nf-core.
 - [#276](https://github.com/nf-core/demultiplex/pull/276) Template update for nf-core/tools v3.0.2
+- [#284](https://github.com/nf-core/demultiplex/pull/284) nf-core modules and subworkflows update. nf-test version update.
 
 ### `Fixed`
 

diff --git a/modules.json b/modules.json
@@ -67,7 +67,7 @@
                     },
                     "samshee": {
                         "branch": "master",
-                        "git_sha": "3c464e75051db485c1b37ab9f1ea2182fb3d3533",
+                        "git_sha": "467c202a876d26af544fa8c4b22a050a535462a7",
                         "installed_by": ["modules"]
                     },
                     "seqtk/sample": {
@@ -101,7 +101,7 @@
                     },
                     "utils_nextflow_pipeline": {
                         "branch": "master",
-                        "git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
+                        "git_sha": "56372688d8979092cafbe0c5c3895b491166ca1c",
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nfcore_pipeline": {
@@ -111,7 +111,7 @@
                     },
                     "utils_nfschema_plugin": {
                         "branch": "master",
-                        "git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
+                        "git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
                         "installed_by": ["subworkflows"]
                     }
                 }

diff --git a/modules/nf-core/samshee/meta.yml b/modules/nf-core/samshee/meta.yml
diff --git a/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test b/subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test b/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test
diff --git a/tests/bases2fastq.nf.test.snap b/tests/bases2fastq.nf.test.snap
@@ -206,10 +206,10 @@
             ]
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "24.04.4"
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.0"
         },
-        "timestamp": "2024-10-30T15:25:52.803280321"
+        "timestamp": "2024-11-04T18:21:06.004398729"
     },
     "rnaseq_samplesheet": {
         "content": [