Add sensory corpuscle (#3295)

* Add sensory corpuscle

Adds sensory corpuscle and positions Meissner, Pacinian, Ruffini and Herbst's under it.

* Change  date relation to dcterms-date

* Change synonym type and remove superclass

* define idspace for NIF_Subcellular

With new OWL API 4.5.29 we can now define idspaces for NIF_Subcellular.
Its terms were mistakenly changed to the OBO namespace when using
Protégé 5.6.5. This commit fixes that.

* declare idspace `NIFEXT` that is not OBO URI

* use `terms:contributor` instead of `created_by`

---------

Co-authored-by: Aleix Puig <94959119+aleixpuigb@users.noreply.github.com>
Co-authored-by: Anita Caron <anitacaron@users.noreply.github.com>
Co-authored-by: Anita Caron <anitac@ebi.ac.uk>

src/ontology/uberon-edit.obo

@@ -45,7 +45,9 @@ synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
 synonymtypedef: SENSU "taxonomic disambiguation"
 synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns"
 default-namespace: uberon
-idspace: EFO http://www.ebi.ac.uk/efo/EFO_ 
+idspace: EFO http://www.ebi.ac.uk/efo/EFO_  
+idspace: NIF_Subcellular http://www.neurolex.org/wiki/ 
+idspace: NIFEXT http://uri.neuinfo.org/nif/nifstd/nifext_ 
 treat-xrefs-as-equivalent: AEO
 treat-xrefs-as-equivalent: BILA
 treat-xrefs-as-equivalent: BSPO
@@ -76938,7 +76940,7 @@ xref: NIF_Subcellular:FMA_83604
 xref: SCTID:37419002
 xref: Wikipedia:File\:Gray935.png
 xref: Wikipedia:Lamellar_corpuscle
-is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor
+is_a: UBERON:8900000 {source="Wikipedia"} ! sensory corpuscle
 relationship: part_of UBERON:0002067 {notes="may also be located in organs - check"} ! dermis
 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Gray935.png" xsd:anyURI
 property_value: external_ontology_notes "FMA treats pacinia and G-M as distinct" xsd:string {external_ontology="FMA"}
@@ -152845,7 +152847,7 @@ def: "The Corpuscles of Herbst or Herbst corpuscles are a nerve-ending similar t
 synonym: "corpuscles of Herbst" RELATED [Wikipedia:Corpuscles_of_Herbst]
 synonym: "Herbst corpuscle" RELATED [Wikipedia:Corpuscles_of_Herbst]
 xref: Wikipedia:Corpuscles_of_Herbst
-is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor
+is_a: UBERON:8900000 {source="Wikipedia"} ! sensory corpuscle
 relationship: in_taxon NCBITaxon:8782 ! Aves
 
 [Term]
@@ -152880,7 +152882,7 @@ xref: NCIT:C13171
 xref: SCTID:41421000
 xref: UMLS:C0205831 {source="ncithesaurus:Meissner_Corpuscle"}
 xref: Wikipedia:Meissner%27s_corpuscle
-is_a: UBERON:0012449 {source="Wikipedia"} ! mechanoreceptor
+is_a: UBERON:8900000 {source="Wikipedia"} ! sensory corpuscle
 relationship: part_of UBERON:0002199 ! integument
 
 [Term]
@@ -152948,7 +152950,7 @@ xref: NCIT:C13175
 xref: SCTID:53140000
 xref: UMLS:C0035943 {source="ncithesaurus:Ruffinis_Corpuscle"}
 xref: Wikipedia:Bulbous_corpuscle
-is_a: UBERON:0012449 {source="FMA"} ! mechanoreceptor
+is_a: UBERON:8900000 {source="FMA"} ! sensory corpuscle
 relationship: part_of UBERON:0002199 ! integument
 property_value: curator_notes "there is some debate as to its existence[ISBN:9780849388118]" xsd:string
 property_value: external_ontology_notes "MP says subcutaneous tissue of digits; NCITA says hypodermis" xsd:string {external_ontology="MP"}
@@ -177339,7 +177341,7 @@ alt_id: UBERON:0025487
 synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100]
 is_obsolete: true
 consider: BIRNLEX:4100
-consider: nifext:13
+consider: NIFEXT:13
 
 [Term]
 id: UBERON:0025236
@@ -224687,6 +224689,17 @@ intersection_of: luminal_space_of UBERON:0002299 ! alveolus of lung
 relationship: dc-contributor https://orcid.org/0009-0000-8480-9277
 property_value: dcterms-date "2024-06-28T10:50:18Z" xsd:dateTime
 
+[Term]
+id: UBERON:8900000
+name: sensory corpuscle
+def: "A mechanosensory complex in the terminal end of some nerves that forms a corpuscle. It consists of one or more neuronal terminations and associated non-neuronal cells." [PMID:35356056]
+synonym: "COEC" RELATED OMO:0003000 [PMID:35356056]
+synonym: "cutaneous end-organ complex" EXACT [PMID:35356056]
+xref: http://www.wikidata.org/entity/Q126363978
+is_a: UBERON:0012449 ! mechanoreceptor
+relationship: dc-contributor https://orcid.org/0000-0003-2473-2313
+property_value: dcterms-date "2024-06-12T13:51:05Z" xsd:string
+
 [Typedef]
 id: aboral_to
 name: aboral to