flash-api v0.5.2

Updated cosas dependency

flash-api v0.5.1

Updated cosas dependency

flash-api v0.5.0

• #20: refactored code similarly to blast-api and simplified expression serialization (now doesn't require implicits)
• #21: Dropped read-len, fragment-len and fragment-len-stddev options
• #23: Updated the build; cross-compiled with Scala 2.11/2.12

flash-api v0.4.0

• #14: Renamed the project to flash-api
• #15: Removed tototoshi-csv and better-files dependencies

flash v0.3.0

• Removed datasets dependency

flash v0.2.1

A summary of changes

• update to ohnosequences/cosas 0.8.0
• update to ohnosequences/datasets 0.2.0
• use better-files instead of java.io.File

flash v0.2.0

Update to cosas 0.8.0.

flash v0.2.0-M1

This is a release based on the stable version of datasets (0.2.0-M2) and cosas (0.7.1), before breaking changes.

flash v0.1.0

0.1.0

First release for the FLASh typesafe Scala API. Main features are

• all FLASh options (but those directly related to in/out behavior) are available.
• The input/output options have been restricted to providing two fastq files comprising a paired-end set for input, and the default fastq output. The input and output are files, no stdin/stdout options.
• FLASh expressions, representing the commands that you can execute with FLASh, are completely typesafe. The only possible runtime errors are
  1. wrong option values, including non-existing input etc (we will work on this as much as possible within the Scala type system constraints)
  2. flash not installed
• FLASh expressions will always have the full information about the exact command the represent, including the values of all options (their defaults if they are not modified when building that expression)