Funnel 0.11.1 release #539
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| name: Nextflow Test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| jobs: | |
| build: | |
| uses: ./.github/workflows/build.yml | |
| nextflow: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download Funnel | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: funnel | |
| - name: Start Funnel | |
| run: | | |
| chmod +x ./funnel | |
| ./funnel server --LocalStorage.AllowedDirs $HOME run & | |
| - name: Install Nextflow | |
| run: | | |
| echo "Installing Nextflow: https://www.nextflow.io/docs/latest/install.html" | |
| # Install Java 17 | |
| curl -s https://get.sdkman.io | bash | |
| source "/home/runner/.sdkman/bin/sdkman-init.sh" | |
| sdk install java 17.0.10-tem | |
| java -version | |
| # Install Nextflow | |
| curl -s https://get.nextflow.io | bash | |
| chmod +x nextflow | |
| mkdir -p $HOME/.local/bin/ | |
| mv nextflow $HOME/.local/bin/ | |
| # Ensure Nextflow is in PATH | |
| export PATH=$HOME/.local/bin:$PATH | |
| echo "PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV | |
| nextflow info | |
| - name: Install nf-canary and GA4GH-TES plugin | |
| run: | | |
| git clone https://github.com/seqeralabs/nf-canary | |
| cd nf-canary | |
| cat <<EOF >> nextflow.config | |
| plugins { | |
| id 'nf-ga4gh' | |
| } | |
| process.executor = 'tes' | |
| tes.endpoint = 'http://localhost:8000' | |
| EOF | |
| - name: Run nf-canary tests | |
| run: | | |
| nextflow run nf-canary/main.nf |