Repositories list

• QM-qPCR-joint

  Public
  Quantitative metabarcoding expanded with a qPCR reference in a joint modelling framework, using data from NOAA hake cruise eDNA samples

  HTML

  •0•0•0•1•Updated Nov 14, 2024Nov 14, 2024

• Valdiviaetal_2D-eDNA-spatial-distributions

  Public
  This repository contains the code used to create large-scale 2D distributions of eDNA from three marine mammal species using a GAM approach. The associated manuscript is currently in preparation for publication.

  R

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  Creative Commons Zero v1.0 Universal

  •2•0•2•0•Updated Aug 22, 2024Aug 22, 2024

• metabarcoding_QAQC_pipeline

  Public
  Pipeline scripts for initial quality control, ASV assignment, taxonomic classification, and preliminary data visualization

  R

  •3•0•13•0•Updated Mar 4, 2024Mar 4, 2024

• Amplification_Bias_Correction

  Public
  Following QAQC of sequence data using the pipeline in the "metabarcoding_QAQC_pipeline" repository, use this step to correct for any primer- or species-specific biases in amplification efficiency.

  R

  •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

• taxonomic-reference-database

  Public
  Code and files used to build reference databases for taxonomic classification of metabarcode sequence data.

  R

  •0•1•0•0•Updated Jan 23, 2023Jan 23, 2023