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    127 repositories

    • AnVIL_Collection

      Public
      📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects
      websiteanvilcontent-librarygdscnedtech-software
      R
      •
      Creative Commons Attribution 4.0 International
      •1•0•4•0•Updated Nov 17, 2024Nov 17, 2024

    • AnVIL_Outreach_Dashboard

      Public
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•4•0•Updated Nov 17, 2024Nov 17, 2024

    • DaSEH

      Public
      🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course
      data-sciencecoursetidyversepublic-healthbeginnerbeginner-friendlyr-programmingniehsenvironmental-healthbeginner-programming
      HTML
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      MIT License
      •1•0•43•1•Updated Nov 14, 2024Nov 14, 2024

    • Intro_to_Python

      Public
      The course covers fundamentals of Python, a high-level programming language, and use it to wrangle data for analysis and visualization.
      hutch-course
      JavaScript
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      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • intro_r_slides

      Public
      Slides for the Intro R course
      HTML
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • Tools_for_Reproducible_Workflows_in_R

      Public
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•10•2•Updated Nov 13, 2024Nov 13, 2024

    • Intro_to_Notebooks

      Public
      JavaScript
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • Datathon-CO2-emissions

      Public
      0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • FH_Cluster_101

      Public
      This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats.
      coursecommand-linehpcccomputing-clusterhutch-course
      JavaScript
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      Creative Commons Attribution 4.0 International
      •2•0•9•1•Updated Nov 13, 2024Nov 13, 2024

    • AnVIL_Poll_2024

      Public
      A summary of our findings from the 2024 State of the AnVIL user poll.
      HTML
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      MIT License
      •0•0•4•1•Updated Nov 8, 2024Nov 8, 2024

    • Ethical_Data_Handling_for_Cancer_Research

      Public
      This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.
      securitydataprivacyresearchethics
      TeX
      •
      Creative Commons Attribution 4.0 International
      •0•1•13•0•Updated Nov 8, 2024Nov 8, 2024

    • DataViz_Practice

      Public
      ITN course "Cancer Informatics Data Visualization in Practice" focusing on practicing best practices in data visualization
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•4•2•Updated Nov 6, 2024Nov 6, 2024

    • DataViz_Considerations

      Public
      ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•4•2•Updated Nov 6, 2024Nov 6, 2024

    • project_and_loading

      Public
      Project showing how to work with projects and loading excel files for learning community session.
      0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • test_bench_to_bytes

      Public
      Dummy repo created to help figure out https://github.com/fhdsl/bench_to_bytes/issues/7
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•4•0•Updated Nov 1, 2024Nov 1, 2024

    • fhdsl_Training_Kit

      Public
      This resource is intended to provide guidance and assistance for creating online and in-person training materials.
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•4•0•Updated Nov 1, 2024Nov 1, 2024

    • NIH_Data_Sharing

      Public
      Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.
      data-managementdata-sharingnihgrant-proposalshutch-course
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•6•0•Updated Nov 1, 2024Nov 1, 2024

    • Robust_Software_Development

      Public
      ITN course on robust software development and giving your code base a full set of features beyond the code itself
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•4•0•Updated Nov 1, 2024Nov 1, 2024

    • Cancer_Clinical_Informatics

      Public
      CSS
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      MIT License
      •1•0•4•1•Updated Nov 1, 2024Nov 1, 2024

    • GitHub_Automation_for_Scientists

      Public
      A course that introduces Github actions to developers of scientific worklflows and software
      CSS
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      Creative Commons Attribution 4.0 International
      •1•0•5•0•Updated Nov 1, 2024Nov 1, 2024

    • bench_to_bytes

      Public
      A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•5•5•Updated Nov 1, 2024Nov 1, 2024

    • Containers_for_Scientists

      Public
      A course to introduce Docker for research purposes
      CSS
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      Creative Commons Attribution 4.0 International
      •0•1•0•1•Updated Oct 30, 2024Oct 30, 2024

    • Choosing_Genomics_Tools

      Public
      A course to help learners find resources and tools to help them process and interpret their genomic data
      TeX
      •
      Creative Commons Attribution 4.0 International
      •6•7•27•1•Updated Oct 30, 2024Oct 30, 2024

    • Proactive_Data_Management_and_Sharing

      Public
      Data management and sharing best practices for biomedical data handling folks
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•11•1•Updated Oct 24, 2024Oct 24, 2024

    • metricminer-dashboard

      Public template
      A template dashboard that helps you display your metricmined data in no time!
      R
      •
      MIT License
      •0•1•8•3•Updated Oct 21, 2024Oct 21, 2024

    • data_snacks

      Public
      Sharing cool data tricks in Python and R
      JavaScript
      •0•1•0•0•Updated Oct 18, 2024Oct 18, 2024

    • metricminer

      Public
      R package that digs up data that matters from APIs, making it dashboard-ready
      edtech-software
      R
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      MIT License
      •0•2•34•3•Updated Oct 16, 2024Oct 16, 2024

    • GDSCN_BioDIGS_BGC

      Public
      This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration of biosynthetic gene clusters in the BioDIGS samples using Galaxy
      coursemodulemetagenomicsbiosynthetic-gene-clustersgdscnbiodigs
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•1•0•Updated Oct 16, 2024Oct 16, 2024

    • GDSCN_BioDIGS_AMR

      Public
      This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy.
      coursemodulegdscnbiodigs
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•2•0•Updated Oct 16, 2024Oct 16, 2024

    • GDSCN_BioDIGS_Book

      Public
      Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS.
      tutorialcourseanvilr-programminggdscnbiodigs
      CSS
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      Creative Commons Attribution 4.0 International
      •0•0•1•1•Updated Oct 16, 2024Oct 16, 2024