fix minor projpred related issue #345
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: n1hility/cancel-previous-runs@v2 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| # As cmdstanr is not yet on CRAN, configure the action to only install the | |
| # 'Depends' packages by default and then manually specify the 'Suggests' | |
| # packages that are needed for R CMD CHECK | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: NA | |
| extra-packages: | | |
| R.rsp | |
| knitr | |
| rcmdcheck | |
| rmarkdown | |
| lme4 | |
| mice | |
| BH | |
| MCMCglmm | |
| ape | |
| stan-dev/cmdstanr | |
| RcppEigen | |
| emmeans | |
| projpred | |
| RWiener | |
| rtdists | |
| extraDistr | |
| spdep | |
| mnormt | |
| splines2 | |
| arm | |
| statmod | |
| diffobj | |
| usethis | |
| testthat | |
| covr | |
| - name: Build Cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = parallel::detectCores()) | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |