fix minor projpred related issue #345
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release', rtools: ''} | |
| - {os: windows-latest, r: 'release', rtools: '42'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release', rtools: ''} | |
| - {os: ubuntu-latest, r: 'release', rtools: ''} | |
| - {os: ubuntu-latest, r: 'oldrel-1', rtools: ''} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: n1hility/cancel-previous-runs@v2 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2.2.6 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| rtools-version: ${{ matrix.config.rtools }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| # As cmdstanr is not yet on CRAN, configure the action to only install the | |
| # 'Depends' packages by default and then manually specify the 'Suggests' | |
| # packages that are needed for R CMD CHECK | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: NA | |
| extra-packages: | | |
| R.rsp | |
| knitr | |
| rcmdcheck | |
| rmarkdown | |
| lme4 | |
| mice | |
| BH | |
| MCMCglmm | |
| ape | |
| stan-dev/cmdstanr | |
| RcppEigen | |
| testthat | |
| emmeans | |
| projpred | |
| RWiener | |
| rtdists | |
| extraDistr | |
| spdep | |
| mnormt | |
| splines2 | |
| arm | |
| statmod | |
| diffobj | |
| - name: Build Cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = parallel::detectCores()) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| build_args: 'c("--no-manual", "--no-build-vignettes")' | |
| args: 'c("--no-manual", "--as-cran", "--ignore-vignettes")' |