-
Pass several arguments to
DHARMa::plotQQunif()
. -
Add
silent
option insimulate.sdmTMB()
. Setting it toFALSE
allows
monitoring simulations from larger models. -
Fix bug in
est_non_rf1
andest_non_rf2
columns when all the following
conditions were true:- predicting on new data
- using a delta model
- including IID random intercepts or time-varying coefficients
See #342. Thanks to @tom-peatman for the issue report.
-
Fix delta-gamma binomial link printing for
type = 'poisson-link'
#340 -
Add suggestion to use an optimized BLAS library to README.
-
Add warning if it's detected that there were problems reloading (e.g., with
readRDS()
) a fitted model. Simultaneously revert the approach to
how reloaded models are reattached. -
Move
log_ratio_mix
parameter to 2nd phase with starting value of -1 instead
of 0 to improve convergence. -
Fix bugs for
nbinom1()
andnbinom2_mix()
simulation. -
Allow
profile
argument in the control list to take a character vector of
parameters. This move these parameters from the outer optimization problem to
the inner problem (but omits from the from the Laplace approximation). See
documentation in TMB. This can considerably speed up fitting models with many
fixed effects. -
Add theoretical quantile residuals for the generalized gamma distribution.
Thanks to J.C. Dunic. #333 -
Add
"poisson-link"
option to delta-mixture lognormal. -
Fix bug in simulation from Poisson-link delta models.
-
Simplify the internal treatment of extra time slices (
extra_time
). #329
This is much less bug prone and also fixes a recently introduced bug. #335
This can slightly affect model results compared to the previous approach if
extra time was used along with smoothers since the 'fake' extra data
previously used was included when mgcv determined knot locations for
smoothers.