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Prerequisites and Dependencies
jhensl19 edited this page May 31, 2024
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- python >= 3.8
| Tool | Version | Publication |
|---|---|---|
| Fastqc | 0.12.1 | None |
| Fastp | 0.23.4 | Chen et al. 2018 |
| Porechop | 0.2.4 | None |
| bbmap | 39.06 | None |
| Prodigal | 2.6.3 | Hyatt et al. 2010 |
| FragGeneScanRs | v1.1.0 | Van der Jeugt et al. 2022 |
| Prodigal-gv | 2.2.1 | Camargo et al. 2023 |
| Phanotate | 1.5.0 | McNair et al. 2019 |
| HMMER | 3.4 | Johnson et al. 2010 |