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rickyota authored May 24, 2024
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Expand Up @@ -285,11 +285,11 @@ $ ./genoboost score \

`--dir <DIR>` : Directory to output score files.

`--dir-wgt [DIR]` : Same directory specified on training.
`--dir-wgt [DIR]` : The same directory specified for training.

`--file-wgt [FILE]` : Use this specific SNV weight file.

`--file-genot <FILE>`: Prefix of a plink1 or plink2 file (.bed, .fam, .bim or .pgen, .psam, .pvar/.pvar.zst should exist).
`--file-genot <FILE>`: Prefix of a plink1 or plink2 file (`.bed`, `.fam`, `.bim` or `.pgen`, `.psam`, `.pvar/.pvar.zst` should exist).

`--genot-format [FORMAT]`: {`plink`, `plink2`, `plink2-vzs`}. Genotype format. Default is `plink`.

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### <a name="computational-time"></a>Computational Time

For ~216 thousands training samples and ~1.1 million SNVs for 10,000 unique SNVs, GenoBoost would take 10 hours.
For ~216 thousand training samples and ~1.1 million SNVs, GenoBoost would take 10 hours to output weights for 10,000 unique SNVs.

[release]: https://github.com/rickyota/genoboost/releases
[rust-install]: https://www.rust-lang.org/tools/install

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