VirtualStaining using cGAN

Train and evaluate conditional generative adveserial networks to virtually stain stacks of brightfield images.

This project is powered by DeepTrack 2.0

Installation

Clone the repository using git clone https://github.com/softmatterlab/VirtualStaining

Installing dependencies using pip

Requires python >= 3.6

Open a terminal and run pip install -r misc/requirements.txt

For use with a GPU, please refer to tensorflow

Installing dependencies using Docker

Requires Docker.

Open a terminal, move into VirtualStaining, and run docker build . -t VirtualStaining

Start the container by running docker run --name VirtualStaining -it VirtualStaining