Merge pull request #407 from ssciwr/pre-commit-ci-update-config #845
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| name: CI | |
| on: | |
| # We run CI on pushes to the main branch | |
| push: | |
| branches: | |
| - main | |
| # and on all pull requests to the main branch | |
| pull_request: | |
| branches: | |
| - main | |
| # as well as upon manual triggers through the 'Actions' tab of the Github UI | |
| workflow_dispatch: | |
| jobs: | |
| linux-test: | |
| name: Testing on Linux | |
| runs-on: ubuntu-20.04 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Create afwizard conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: afwizard-dev | |
| environment-file: environment.yml | |
| - name: SSH setup | |
| uses: webfactory/ssh-agent@v0.5.3 | |
| with: | |
| ssh-private-key: | | |
| ${{ secrets.SSH_KEY }} | |
| - name: Add known host | |
| run: | | |
| echo "ssc-jupyter.iwr.uni-heidelberg.de ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIJlEBwr7Qv0expAPxukZOmIUcVI1erVPya+GkzCd+iQK" >> ~/.ssh/known_hosts | |
| - name: Install Wine to test lastools backend | |
| run: | | |
| sudo apt update | |
| sudo apt install unzip wget wine | |
| - name: Install development dependencies | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| - name: Install OPALS | |
| working-directory: ${{ runner.workspace }} | |
| run: | | |
| scp -P 22222 ssc-github@ssc-jupyter.iwr.uni-heidelberg.de:/home/ssc-github/opals_2.5.0_linux64.tar.gz ${{ runner.workspace }} | |
| tar xzvf ${{ runner.workspace }}/opals_2.5.0_linux64.tar.gz | |
| echo "OPALS_DIR=${{ runner.workspace }}/opals_2.5.0" >> $GITHUB_ENV | |
| - name: Install LAStools | |
| working-directory: ${{ runner.workspace }} | |
| run: | | |
| wget https://github.com/LAStools/LAStools.github.io/raw/master/download/LAStools_210628.zip | |
| unzip LAStools_210628.zip | |
| rm LAStools_210628.zip | |
| echo "LASTOOLS_DIR=${{ runner.workspace }}/LAStools" >> $GITHUB_ENV | |
| - name: Install Python package | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: Run Python tests including notebooks | |
| run: | | |
| python -m pytest --nbval-lax | |
| - name: Run coverage tests | |
| run: | | |
| python -m pytest --cov=./afwizard --cov-report=xml | |
| - name: "Upload coverage to Codecov" | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: false | |
| files: ./coverage.xml | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| windows-test: | |
| name: Testing on Windows | |
| runs-on: windows-2019 | |
| if: github.event_name == 'workflow_dispatch' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Create afwizard conda environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| activate-environment: afwizard-dev | |
| environment-file: environment.yml | |
| - name: SSH setup | |
| uses: webfactory/ssh-agent@v0.5.3 | |
| with: | |
| ssh-private-key: | | |
| ${{ secrets.SSH_KEY }} | |
| - name: Add known host | |
| run: | | |
| echo "ssc-jupyter.iwr.uni-heidelberg.de ssh-ed25519 AAAAC3NzaC1lZDI1NTE5AAAAIJlEBwr7Qv0expAPxukZOmIUcVI1erVPya+GkzCd+iQK" >> ~/.ssh/known_hosts | |
| - name: Install development dependencies | |
| run: | | |
| python -m pip install -r requirements-dev.txt | |
| - name: Download OPALS (Windows) | |
| working-directory: ${{ runner.workspace }} | |
| shell: powershell | |
| run: | | |
| c://progra~1//git//usr//bin//scp.exe -P 22222 ssc-github@ssc-jupyter.iwr.uni-heidelberg.de:/home/ssc-github/opals_2.5.0_win64-setup.exe ${{ runner.workspace }} | |
| - name: Install OPALS (Windows) | |
| working-directory: ${{ runner.workspace }} | |
| shell: powershell | |
| run: | | |
| Start-Process -FilePath ${{ runner.workspace }}\opals_2.5.0_win64-setup.exe -ArgumentList /S,/TYPE=typical,/DATA=,/D=${{ runner.workspace }}\opalsInstallation -Wait | |
| echo "OPALS_DIR=${{ runner.workspace }}\opalsInstallation" >> $env:GITHUB_ENV | |
| - name: Install LAStools | |
| working-directory: ${{ runner.workspace }} | |
| shell: powershell | |
| run: | | |
| Invoke-WebRequest https://github.com/LAStools/LAStools.github.io/raw/master/download/LAStools_210628.zip -OutFile ${{ runner.workspace }}\LAStools.zip | |
| Expand-Archive -LiteralPath ${{ runner.workspace }}\LAStools.zip -DestinationPath ${{ runner.workspace }} | |
| echo "LASTOOLS_DIR=${{ runner.workspace }}/LAStools" >> $env:GITHUB_ENV | |
| - name: Install the afwizard Python package | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: Run Python tests | |
| run: | | |
| python -m pytest --nbval-lax |