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26 Open 49 Closed
26 Open 49 Closed
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Issues list

How to import dataset from collection?
#151 opened Aug 19, 2024 by YXC33
7
could not run pseudobulk on imported data
#149 opened Jul 11, 2024 by cynthialiu
1
2
pseuodbulk file not found in the cloud - 3fe53a40-38ff-4f25-b33b-e4d60f2289ef
#146 opened Jun 10, 2024 by stemangiola
1
add BiorXIV reference in CITATION file and in every function
#145 opened Jun 8, 2024 by stemangiola
cache for pseudobulk same as for single cell?
#144 opened Jun 8, 2024 by stemangiola
2
Add citation file
#141 opened May 13, 2024 by stemangiola
add get_pseudobulk API
#136 opened Apr 12, 2024 by stemangiola
4
take intersection of genes in the get_single_cell_experiment function
#132 opened Mar 15, 2024 by stemangiola
Update the readme to reference the Bioconductor publication
#126 opened Jan 19, 2024 by multimeric
Trying to use the package: accessing the METADATA_URL
#125 opened Jan 19, 2024 by shivUSF
1
file_id_db=="e427efe71e8e94de5b3e48eb98236323" fails
#124 opened Jan 17, 2024 by stemangiola
2
duplicate 'row.names' are not allowed
#123 opened Jan 10, 2024 by stemangiola
6
Add a download-nly function, for deploying the database without compiling a 30M cell SingleCellExperiment
#120 opened Oct 27, 2023 by stemangiola
correct typo in tissue harmonised
#106 opened Mar 23, 2023 by stemangiola
Some studies of the Human Cell Atlas cannot be found
#104 opened Mar 21, 2023 by KoppGergely
3
Minor repo/website feedback
#90 opened Feb 22, 2023 by multimeric
2 of 8 tasks
5
plan forward
#85 opened Feb 21, 2023 by stemangiola
2 of 10 tasks
add disease to sample same, as there are 24 samples with multiple diseases
#84 opened Feb 21, 2023 by stemangiola
@stemangiola
Database update process
#74 opened Feb 16, 2023 by multimeric
3
Separate the HCA content from this API repository
#69 opened Feb 12, 2023 by stemangiola
@stemangiola
Create GIF video for the API usage
#55 opened Feb 8, 2023 by stemangiola
Explanation of the DB versions
#43 opened Jan 25, 2023 by stemangiola
Build Figure 3: query interface, framework pipeline, and technical benchmark
#26 opened Nov 3, 2022 by stemangiola
3 tasks
@multimeric
2
integrate cell types and reclassify
#13 opened Oct 8, 2022 by stemangiola
8 tasks
@multimeric @ConnieLWS
13
Converting makeflow workflow to a more mainstream workflow
#8 opened Sep 20, 2022 by stemangiola
1
ProTip! Exclude everything labeled bug with -label:bug.