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biobank

Here are 32 public repositories matching this topic...

OCT-Converter

marksgraham / OCT-Converter

Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

python fda dicom e2e zeiss biobank oct heidelberg fundus topcon

Updated Nov 3, 2024
Python

molgenis / molgenis

MOLGENIS - for scientific data: management, exploration, integration and analysis.

javascript java bioinformatics genetics catalogue freemarker biobank lifescience molgenis

Updated Dec 22, 2023
Java

kenhanscombe / ukbtools

An R package to manipulate and explore UK Biobank data

r biobank ukb uk-biobank kcl-sgu

Updated Feb 22, 2023
HTML

hakyimlab / ukbrest

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

reproducible-research reproducible-science reproducibility biobank uk-biobank

Updated Jul 12, 2021
Python

limbus

AberystwythSystemsBiology / limbus

LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

lims biobank biospecimen biobanking

Updated Aug 14, 2024
Python

BBMRI-ERIC / miabis

The Minimum Information About BIobank data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of minimal biobank-related data for different purposes across a wide range of database implementations.

biobank biobanking biobank-data biosample data-sharing-standard

Updated Nov 5, 2024

BBMRI-ERIC / negotiator

An Open-source access negotation system for Research Infrastructures

research biobank access-management negotiator bbmri

Updated Nov 14, 2024
Java

CBSR-Biobank / biobank

Biorepository application for tracking biospecimens.

bioinformatics lims biobank biospecimen

Updated Jun 9, 2024
Java

snpnet

rivas-lab / snpnet

snpnet - Efficient Lasso Solver for Large-scale genetic variant data

genetics linear-regression statistical-learning prediction lasso sparse survival-analysis cox-regression biobank ukbiobank elastic-net-regression snpnet-cox

Updated Mar 5, 2024
R

CBSR-Biobank / bbweb

Biobank Web Application

bioinformatics lims biobank biospecimen

Updated Sep 15, 2022
Scala

TIBHannover / BacDiveR

Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.

diversity r api-client rstats microbiology bacteria r-package biobank rlang bacterial-database microorganism webservice-client bacterial bacteriology rlanguage bacterial-samples bacdive

Updated May 28, 2022
R

BBMRI-ERIC / negotiator-frontend

The BBMRI-ERIC Negotiator is a service for structured negotiation with biological resources dealing with human data and/or biological samples. The reference implementation for the frontend is available in this repository.

vuejs negotiation biobank access-management

Updated Nov 14, 2024
Vue

hdg204 / Rdna-nexus

Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench

bioinformatics r genetics risk nexus dna snp uk scores biobank

Updated Aug 8, 2024
R

BBMRI-ERIC / negotiator-v2

The BBMRI-ERIC Negotiator service for structured negotiation with biological resources dealing with human data and/or biological samples.

java negotiation specimen biobank

Updated Feb 20, 2024
Java

samply / bbmri-fhir-ig

This is the source for the BBMRI.de / GBA Implementation Guide.

fhir biobank fhir-profiles

Updated Sep 1, 2023
GLSL

multisnpnet-Cox

rivas-lab / multisnpnet-Cox

Multiresponse time-to-event Cox proportional hazards model - CPU

cpu survival-analysis cox-regression cox-model biobank human-genetics survival-prediction multiresponse-sparse-regression cox-ph

Updated Feb 9, 2021
R

jlc-christie / axivity-ax3-tool

Command line tool written in c++ for easily extracting light and temperature data from Axivity AX3 accelerometers used in the UKBiobank

cplusplus-11 biobank ukbiobank axivity ax3

Updated Feb 13, 2019
C++

BBMRI-cz / fhir-module

A data integration tool for BBMRI-ERIC biobanks.

fhir data-integration biobank bbmri

Updated Nov 4, 2024
Python

rivas-lab / multisnpnet-Cox_gpu

Multiresponse time-to-event Cox proportional hazards model - GPU

genetics gpu gpu-acceleration survival-analysis gpu-computing cox-regression prediction-model biobank multiresponse-sparse-regression

Updated Jan 2, 2021
C++

christacaggiano / treeWas-exploration

exploration of TreeWas/TreeWas2 code for the Zaitlen lab. Based on TreeWas developed by McVean Lab @ Oxford.

statistical-genetics biobank treewas

Updated Oct 5, 2018
HTML

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