AmPtool contains Matlab functions for analysis of patterns in (functions of) parameter values of the Add-my-Pet collection.

Analysis and visualization of bioenergetic pathways in human gut microbiome datasets.

This Python program translates R123 dye fluorescence signals into mitochondrial membrane potential (in mV). The tool provides a streamlined and accurate approach for researchers to quantify membrane potential based on dye intensity, aiding in mitochondrial function studies.

An R Shiny App to adjust and visualize the Gibbs Energy of ATP Hydrolysis for temperature, ionic strength, pH, and free magnesium.

A calculator to adjust equilibrium constants in the Creatine Kinase Bioenergetic Clamp. Also, a calculator to adjust the Gibbs Energy of ATP Hydrolysis, the Creatine Kinase Equilibrium constant, and the Adenylate Kinase equilibrium constant for temperature, ionic strength, pH, and free magnesium.

Spatiotemporal bioenergetics in the cardiac cell

This repository contains codes and data needed to reproduce the analyses and figures of the manuscript: García-Gómez, G., Hirst A., Spencer, M., and Atkinson, D. (2023). Responses of intraspecific metabolic scaling to temperature and activity differ between water- and air-breathing ectothermic vertebrates.