GATK and VARSCAN analysis pipeline

A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.

utilities for cromwell hackathon

Containerisation-agnostic LSF execution configuration for Cromwell

Cromwell pipelines for human genetic data

Automation tool for high-throughput sequencing DNA methylation data

Workflow management system benchmark

An opinionated Cromwell orchestration manager.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Example Repository for setting up GitHub Actions for WDL and CWL workflows for CI/CD

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

BSF ATAC-seq pipeline

Workflow pipelines for the Solita TRE

Reconstructed archive of Gentoox-Loader (Cromwell fork)

Cromwell+WDL Boilerplate

Cromwell Output Transfer

Setting up Cromwell + AWS GWF (Genomics Workflows)

Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.