Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

CUT&RUN and CUT&Tag data processing and analysis

These are tools for post GWAS analysis. Please see below link as a document for install and use.

Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes

Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.

Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.