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iq-tree

Here are 9 public repositories matching this topic...

Cibiv / IQ-TREE

Efficient phylogenomic software by maximum likelihood

phylogenetics model-selection mixture-model maximum-likelihood phylogenomics iq-tree ultrafast-bootstrap

Updated Nov 4, 2021
C++

reslp / iqtreeGUI

iqtreeGUI - A graphical user interface for IQ-TREE

phylogenetic-trees graphical phylogenetics maximum-likelihood iq-tree

Updated Dec 9, 2023
Python

joshlvmh / iqtree_arm_neon

IQ-TREE ported to work for systems with ARM NEON ISA

arm neon sse simd intrinsics iq-tree simd-intrinsics intel-sse-intrinsics sse2neon

Updated Oct 21, 2020
C++

btmartin721 / ddrad_scripts

Random scripts for dealing with ddRAD data, including output from pyRAD

stats iq-tree radseq pyrad ddrad

Updated Aug 31, 2020
Python

Mapleia / BIOL417

Phylogeny related tools packaged into Dockerized containers.

docker ubc phylogeny iq-tree partition-finder notung

Updated Nov 3, 2023
PowerShell

sennettm / Column_Cross_Validation_LOCO_XV

A new model-selection criteria for phylogenetics to calculate the predictive log-likelihood score.

cross-validation phylogenetics molecular-evolution iq-tree model-selection-criteria ancestral-sequence-reconstruction

Updated Dec 14, 2022
Python

juliawiggeshoff / astral-species-tree

This is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a species tree following the multispecies coalescent model with ASTRAL. Imported from my GitLab.

workflow snakemake maximum-likelihood astral iq-tree species-tree multispecies-coalescent

Updated Dec 21, 2023
Python

juliawiggeshoff / supermatrix-tree

Snakemake workflow that concatenate MSA files into a supermatrix and calculates a maximum likelihood tree. Imported from my GitLab

workflow snakemake maximum-likelihood supermatrix-phylogenetic-analyses iq-tree

Updated Apr 21, 2023
Python

PopovIILab / PhoBl

🦇🦠🌳Supplementary materials for study on detection of Brno loanvirus in Southern Russia

pipeline biopython phylogenetics entrez bats iq-tree mafft lab-journal itol hantavirus

Updated Oct 14, 2024
Jupyter Notebook

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