🚿A Tidy Tool for Phylogenetic Tree Data Manipulation

A feature rich and easy to use phylogenetic tree editor

Fungal Identification Pipeline

A pipeline to construct phylogenetic tree using BUSCOs

Draw a phylogenetic tree, along with a table of metadata

The prog is written to construct the phylogenetic tree (dendrogram) based on DNA/Protein sequences of species given in a dataset using Agglomerative and Divisive Hierarchical Clustering and to compare Agglomerative and Divisive methods

web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.

Code and data description to reproduce Tietje et al. (2022) Global variation in diversification rate and species richness are unlinked in plants (https://doi.org/10.1073/pnas.2120662119)

Bird (avian) phylogenetic tree with bird pictures

A tool for phlyo tree, a phylogenetic tree construction software.

Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.

Implementation of the tree triplet distance algorithms from our paper "Cache oblivious algorithms for computing the triplet distance between trees", published in ESA 2017

A stand-alone tool for evaluating simple statistics of orthologs

Script for creating a tANI distance matrix for use in phylogenetic reconstruction.

Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.

A couple of assignments I did for a course in computational (molecular) biology @ University of Warsaw

Script for sorting FASTA sequences by clade in a given tree topology.

[Python] Construction of SARS-CoV-2 Phylogenetic Tree.

Example files for Benin NGS capacity building project