rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)
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Updated
Jun 25, 2024 - MATLAB
rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)
Repository for the Brainhack School 2020 team working with fMRI and ABIDE data to train machine learning models.
Easylearn is designed for machine learning mainly in resting-state fMRI, radiomics and other fields (such as EEG). Easylearn is built on top of scikit-learn, pytorch and other packages. Easylearn can assist doctors and researchers who have limited coding experience to easily realize machine learning, e.g., (MR/CT/PET/EEG)imaging-marker- or other…
Graph saliency maps through spectral convolutional networks for brain mapping
xDF estimates variance of Pearson's correlations among highly autocorrelated time series.
A Python software package for BWAS
System segregation (see Chan et al. 2014 PNAS) and RSFC brain network tools
BIDS App for resting state signal extraction using nilearn.
A Python software package for sKPCR
Documentation and MATLAB code for test-retest functional MRI studies.
This repository contains the notes, matlab toolbox and implement document of the brant. Enjoy!
Easy Resting State Analysis with Python
Inter-Regional High-level Relation Learning from Functional Connectivity via Self-Supervision - PyTorch Implementation (MICCAI 2021)
Seed-based resting-state functional connectivity with Nilearn.
Analysis scripts used to analyze the local and global functional connectivity of the medial temporal lobe including the amygdala ('A-MTL') described in Ruiz-Rizzo et al. (2020), NeuroImage.
Scripts for the paper: A supervoxel-based method for groupwise whole brain parcellation with resting-state fMRI data.
Sparsely Reconstructed Graphs (SpaRG) for robust and interpretable fMRI analysis using GNNs and VAEs.
PUMI: neuroimaging Pipelines Using Modular workflow Integration
Between-network functional connectivity across frequency bins described in Küchenhoff et al. (2021), European Journal of Neuroscience.
Resting-state Functional Correlation (RSFC) node set (Chan et al. 2014 PNAS)
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