All-in-one analysis pipeline
A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
Identify transcription factor-enhancer/promoter-gene network from run-on sequencing data
Multi-omics Systems-Level Interactive Data Exploration (multiSLIDE)
Dual threshold optimization for identifying convergent evidence: TF binding locations and TF perturbation responses.
Network Regression Embeddings reveal cell-type Transcription Factor coordination for target gene (TG) regulation
Database of HTH-DNA complexes
This repository is the code source for the RegOmics tool - Regulatory extraction for Omics data.
A package to identify functional TFBS
Multitask Learning for Transcriptional Regulatory Network Inference in Julia
Reconstruct a Transcriptional Regulatory Network using the principle of Maximum Entropy.
Screen tf motif within provided regions.
Gibbs 3.2 formerly located at http://ccmbweb.ccv.brown.edu/gibbs/gibbs.html
Integrating the transcriptional regulatory network with genome-scale metabolic models.
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