Example files for Benin NGS capacity building project

Processing text files and converting them into a VCF file form which contacts can be imported to the mobile phone

bcftools singularity container

This application is designed to solve a simple problem. You might need to save a bunch of contacts from an excel sheet. This does that.

Simple tool to merge VCF contacts.

Codes i wrote for the paper "genomic resources for Mediterranean fishes"

Custom command line utility tools to manipulate vcf files

A python parser for vcf bioinformatics file

A docker wrapper for plink

A formatter that converts vcf files to Outlook contacts

Project for the course of Computational Human Genomics, held by Francesca Demichelis (a.y. 2021-2022) @ University of Trento

Scripts in R for analyses of Isolation by Resistance (IBR) - PART 3 in LANDSCAPE GENOMICS PIPELINE

The repository contain directories of projects done during the bioinformatics degree program

Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE

Form interface so users can custom filter existing VCF files and export in a variety of formats.

VCF: Variant Call Format files are difficult to understand at first, I already had to dive into them in order to learn how to edit them, so you can use my scripts. Some of these functions already exist in vcftools, but it seems it stopped being updated. so you can use these scripts to do various tasks with them

A public, web-based homozygosity mapping tool

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

A program for fixing TASSEL produced GBS VCFs so that they are coded reference-alternate

Useful NGS utilities for everyday use in the form of stand-alone tool.