Accurate metagenomic profiling && Fast large-scale sequence/genome searching

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes

ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data

The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.

discover-virome: identify and quantify viruses from metagenomic assemblies

quantify-virome: identify and quantify viruses from metagenomic shotgun sequences

The Metagenome-Assembled Genome Inventory for Children (MAGIC)

microbialites stromatolites metagenomes metagenomics denovo-assembly

A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.

Viral contig analysis (hecatomb-lite)

website of tomato virome database