Update install instructions to include ninja and python 3.11 #248
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| name: CI | |
| on: | |
| push: | |
| release: | |
| workflow_dispatch: | |
| env: | |
| PETSC_VERSION: 3.19.4 | |
| UW_VERSION: 2.15.0 | |
| OMPI_VERSION: 4.1.4 | |
| MPICH_VERSION: 3.4.3 | |
| jobs: | |
| check: | |
| name: Check if Docker files have changed | |
| runs-on: ubuntu-latest | |
| outputs: | |
| run_ompi: ${{ steps.check_files.outputs.run_ompi }} | |
| run_mpich: ${{ steps.check_files.outputs.run_mpich }} | |
| run_petsc: ${{ steps.check_files.outputs.run_petsc }} | |
| run_lavavu: ${{ steps.check_files.outputs.run_lavavu }} | |
| run_uw: ${{ steps.check_files.outputs.run_uw }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - name: check files | |
| id: check_files | |
| run: | | |
| echo "=============== list changed files ===============" | |
| git diff --name-only HEAD^ HEAD | |
| echo "========== check paths of changed files ==========" | |
| git diff --name-only HEAD^ HEAD > files.txt | |
| echo "run_ompi=false" >> $GITHUB_OUTPUT | |
| echo "run_mpich=false" >> $GITHUB_OUTPUT | |
| echo "run_petsc=false" >> $GITHUB_OUTPUT | |
| echo "run_lavavu=false" >> $GITHUB_OUTPUT | |
| echo "run_uw=false" >> $GITHUB_OUTPUT | |
| while IFS= read -r file | |
| do | |
| echo $file | |
| if [[ $file == "docs/development/docker/petsc/Dockerfile" ]]; then | |
| echo "Change to the Petsc Docker file have been detected." | |
| echo "run_petsc=false" >> $GITHUB_OUTPUT | |
| continue | |
| fi | |
| if [[ $file == "docs/development/docker/lavavu/Dockerfile" ]]; then | |
| echo "Change to the Lavavu Docker file have been detected." | |
| echo "run_lavavu=true" >> $GITHUB_OUTPUT | |
| continue | |
| fi | |
| if [[ $file == "docs/development/docker/mpi/Dockerfile.openmpi" ]]; then | |
| echo "Change to the Base Docker file have been detected." | |
| echo "run_ompi=true" >> $GITHUB_OUTPUT | |
| continue | |
| fi | |
| if [[ $file == "docs/development/docker/mpi/Dockerfile.mpich" ]]; then | |
| echo "Change to the Base Docker file have been detected." | |
| echo "run_mpich=true" >> $GITHUB_OUTPUT | |
| continue | |
| fi | |
| if [[ $file == "docs/development/docker/underworld2/Dockerfile" ]]; then | |
| echo "Change to the Underworld Docker file have been detected." | |
| echo "run_uw=false" >> $GITHUB_OUTPUT | |
| continue | |
| fi | |
| done < files.txt | |
| debug_check: | |
| runs-on: ubuntu-latest | |
| needs: check | |
| steps: | |
| - run: echo ${{ needs.check.outputs.run_ompi }} ${{ needs.check.outputs.run_mpich }}${{needs.check.outputs.run_petsc}} ${{needs.check.outputs.run_lavavu}} ${{needs.check.outputs.run_uw}} | |
| build_mpich_image: | |
| name: Build MPICH Docker image | |
| needs: check | |
| if: needs.check.outputs.run_mpich == 'true' || github.event_name == 'workflow_dispatch' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v2 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build Base Docker Image | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| build-args: MPICH_VERSION = ${{ env.MPICH_VERSION }} | |
| file: ./docs/development/docker/mpi/Dockerfile.mpich | |
| platforms: linux/amd64 | |
| tags: underworldcode/mpich:${{ env.MPICH_VERSION }} | |
| build_ompi_image: | |
| name: Build OpenMPI Docker image | |
| needs: check | |
| if: needs.check.outputs.run_ompi == 'true' || github.event_name == 'workflow_dispatch' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v2 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build Base Docker Image | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| build-args: OMPI_VERSION = ${{ env.OMPI_VERSION }} | |
| file: ./docs/development/docker/mpi/Dockerfile.openmpi | |
| platforms: linux/amd64 | |
| tags: underworldcode/openmpi:${{ env.OMPI_VERSION }} | |
| build_petsc_image: | |
| name: Build PETSc Docker image | |
| needs: [check, build_ompi_image] | |
| #if: always() && (needs.check.outputs.run_petsc == 'true' || github.event_name == 'workflow_dispatch') | |
| if: false # disable petsc github action | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v2 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build Petsc Docker Image | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| push: true | |
| build-args: | | |
| PETSC_VERSION=${{ env.PETSC_VERSION }} | |
| MPI_IMAGE=underworldcode/openmpi:${{env.OMPI_VERSION}} | |
| file: ./docs/development/docker/petsc/Dockerfile | |
| platforms: linux/amd64 | |
| tags: underworldcode/petsc:${{ env.PETSC_VERSION }}-amd64 | |
| ## Github action's times out building petsc multi arch, so manifest commands | |
| ## must be manually applied, below is an example of the commands | |
| # - name: Update manifest | |
| # run: | | |
| # docker build -f ./docs/development/petsc/Dockerfile -t underworldcode/petsc:3.18.0-arm64 | |
| # docker push underworldcode/petsc-3.18.0:arm64 | |
| # docker manifest create underworldcode/petsc:3.18.0 --amend underworldcode/petsc:3.18.0-amd64 --amend underworldcode/petsc:3.18.0-arm64 | |
| # docker manifest push underworldcode/petsc:3.18.0 | |
| build_lavavu_image: | |
| name: Build Lavavu Docker image | |
| needs: check | |
| if: needs.check.outputs.run_lavavu == 'true' || github.event_name == 'workflow_dispatch' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v2 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build Lavavu Docker Image | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| file: ./docs/development/docker/lavavu/Dockerfile | |
| platforms: linux/amd64, linux/arm64 | |
| tags: underworldcode/lavavu | |
| build_underworld_image: | |
| name: Build Underworld Image | |
| needs: [check, build_petsc_image, build_lavavu_image] | |
| # if: always() || github.event_name == 'workflow_dispatch' | |
| if: always() && ( needs.check.outputs.run_uw == 'true' || github.event_name == 'release' ) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v2 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build Underworld Docker Image | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| build-args: PETSC_IMAGE=underworldcode/petsc:${{ env.PETSC_VERSION }} | |
| file: ./docs/development/docker/underworld2/Dockerfile | |
| platforms: linux/amd64 | |
| tags: underworldcode/underworld2:${{ env.UW_VERSION }}b | |
| test_in_UW_Container: | |
| name: Test in Docker Container | |
| needs: build_underworld_image | |
| if: always() | |
| #if: false() # DEBUG: disabling tests | |
| runs-on: ubuntu-latest | |
| container: | |
| image: underworldcode/underworld2:2.14.0b | |
| options: --user root | |
| steps: | |
| - name: Build dependencies | |
| run: | | |
| apt-get update -qq | |
| DEBIAN_FRONTEND=noninteractive xargs -a /opt/installed.txt apt-get install -yq --no-install-recommends | |
| # Note all python dependencies should be in the runtime container | |
| - name: Remove existing Underworld from container | |
| run: | | |
| pip uninstall -y underworld | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Install Underworld | |
| run: | | |
| pip install -vvv . | |
| - name: Run Tests | |
| run: | | |
| cd docs | |
| pytest -vvv pytests/tests.py pytests/test_examples.py pytests/test_user_guide.py | |
| #cd test | |
| #cp -rf ../UWGeodynamics/examples UWGeodynamics/. | |
| #cp -rf ../UWGeodynamics/tutorials UWGeodynamics/. | |
| #cp -rf ../UWGeodynamics/benchmarks UWGeodynamics/. | |
| #pytest -vvv UWGeodynamics | |
| # | |
| # conda_build: | |
| # name: Conda Build (Python ${{matrix.python-version}} ${{ matrix.os }}) | |
| # runs-on: ${{ matrix.os }} | |
| # strategy: | |
| # fail-fast: false | |
| # matrix: | |
| # os: ["ubuntu-latest", "macos-latest"] | |
| # python-version: ["3.9", "3.10"] | |
| # steps: | |
| # - uses: actions/checkout@v3 | |
| # - uses: conda-incubator/setup-miniconda@v2 | |
| # with: | |
| # auto-update-conda: true | |
| # python-version: ${{ matrix.python-version }} | |
| # | |
| # - name: Config Conda | |
| # shell: bash -l {0} | |
| # run: | | |
| # conda install --channel conda-forge conda-build anaconda-client conda-verify | |
| # conda config --add channels conda-forge | |
| # conda config --add channels underworldcode | |
| # conda config --set anaconda_upload no | |
| # anaconda logout | |
| # | |
| # - name: Config Conda For Upload | |
| # if: github.event_name == 'release' | |
| # shell: bash -l {0} | |
| # run: conda config --set anaconda_upload yes | |
| # | |
| # - name: Upload new Packages | |
| # if: github.event_name == 'release' | |
| # shell: bash -l {0} | |
| # run: | | |
| # conda info | |
| # anaconda login --hostname github-actions-${{ matrix.os }}-$RANDOM --username ${{ secrets.ANACONDA_USERNAME }} --password ${{ secrets.ANACONDA_PASSWORD }} | |
| # conda-build --channel conda-forge --user geo-down-under conda | |
| # anaconda logout | |
| # | |
| pypi: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| TWINE_USERNAME: ${{ secrets.TWINE_USERNAME }} | |
| TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest"] | |
| python-version: ["3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Package for Pypi | |
| run: | | |
| python setup.py sdist | |
| - name: Upload to Pypi | |
| if: github.event_name == 'release' | |
| run: | | |
| pip install twine | |
| python -m twine upload dist/* -r pypi |