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Add an option to output a haplotype GBWT from vg rna with node IDs that match the spliced graph #1680

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Add an option to output a haplotype GBWT from vg rna with node IDs that match the spliced graph

Add an option to output a haplotype GBWT from vg rna with node IDs that match the spliced graph #1680

Triggered via pull request October 28, 2024 20:55
@jeizengajeizenga
opened #4430
output-rna-haps
Status Failure
Total duration 49m 36s
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testmac.yml

on: pull_request
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49m 26s
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2 errors and 6 warnings
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The `brew link` step did not complete successfully
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Process completed with exit code 1.
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
Test on Mac
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2, actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Test on Mac
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/cache@v2, actions/checkout@v2, actions/setup-node@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Test on Mac
You are using macOS 12. We (and Apple) do not provide support for this old version. It is expected behaviour that some formulae will fail to build in this old version. It is expected behaviour that Homebrew will be buggy and slow. Do not create any issues about this on Homebrew's GitHub repositories. Do not create any issues even if you think this message is unrelated. Any opened issues will be immediately closed without response. Do not ask for help from Homebrew or its maintainers on social media. You may ask for help in Homebrew's discussions but are unlikely to receive a response. Try to figure out the problem yourself and submit a fix as a pull request. We will review it but may or may not accept it.
Test on Mac
You are using macOS 12. We (and Apple) do not provide support for this old version. It is expected behaviour that some formulae will fail to build in this old version. It is expected behaviour that Homebrew will be buggy and slow. Do not create any issues about this on Homebrew's GitHub repositories. Do not create any issues even if you think this message is unrelated. Any opened issues will be immediately closed without response. Do not ask for help from Homebrew or its maintainers on social media. You may ask for help in Homebrew's discussions but are unlikely to receive a response. Try to figure out the problem yourself and submit a fix as a pull request. We will review it but may or may not accept it.
Test on Mac
The following dependents of upgraded formulae are outdated but will not be upgraded because they are not bottled: python@3.12 glib meson boost